RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 SDHAF1A6NFY7 115 aa11.35□□□□□ -0.59
DDX56-201ENST00000258772 IGHV4-59P01825 116 aa11.35□□□□□ -0.59
DDX56-201ENST00000258772 RPL39P62891 51 aaKnown RBP11.35□□□□□ -0.59
DDX56-201ENST00000258772 RRN3P1Q2M238 152 aa11.35□□□□□ -0.59
DDX56-201ENST00000258772 C9orf85Q96MD7 179 aa11.35□□□□□ -0.59
DDX56-201ENST00000258772 ODF3Q96PU9 254 aa11.35□□□□□ -0.59
DDX56-201ENST00000258772 PKD1L2Q7Z442 2459 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 IGHV3-16A0A0C4DH30 117 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 C11orf86A6NJI1 115 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 LGALS9O00182 355 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 PMVKQ15126 192 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 DEFB112Q30KQ8 113 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 CD300EQ496F6 205 aaPredicted RBP11.34□□□□□ -0.59
DDX56-201ENST00000258772 MDFICQ9P1T7 246 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 A0A0J9YX75 114 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 TEX48A0A1B0GUV7 120 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 F8W1H4 67 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 HOXA3O43365 443 aaPredicted RBP11.34□□□□□ -0.59
DDX56-201ENST00000258772 GATA3P23771 443 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 PAPPA-AS1Q5QFB9 102 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 KLHL30-AS1Q8NEE0 82 aa11.34□□□□□ -0.59
DDX56-201ENST00000258772 DOPEY2Q9Y3R5 2298 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 TRAV12-2A0A075B6T6 113 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 TRBV27A0A0K0K1C4 114 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 IGKV3-20P01619 116 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 SNRPD3P62318 126 aaKnown RBP11.33□□□□□ -0.6
DDX56-201ENST00000258772 PLEKHB2Q96CS7 222 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 TMEM141Q96I45 108 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 TIMM17AQ99595 171 aa11.33□□□□□ -0.6
DDX56-201ENST00000258772 TRBV6-5A0A0K0K1A5 114 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 H3BMG7 143 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 EMP1P54849 157 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 FAM74A4Q5TZK3 123 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 SCGB1D4Q6XE38 83 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 K7EQG2 157 aa11.32□□□□□ -0.6
DDX56-201ENST00000258772 TMEM89A2RUT3 159 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 WFDC2Q14508 124 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 MORN3Q6PF18 240 aaPredicted RBP11.31□□□□□ -0.6
DDX56-201ENST00000258772 AMTNQ6UX39 209 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 Q8N1Y9 231 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 DOPEY1Q5JWR5 2465 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 CELSR2Q9HCU4 2923 aa11.31□□□□□ -0.6
DDX56-201ENST00000258772 M0QY20 66 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 HERVK_113P61574 105 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 SRSF9Q13242 221 aaKnown RBP eCLIP11.3□□□□□ -0.6
DDX56-201ENST00000258772 SYT8Q8NBV8 401 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 NRGNQ92686 78 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 IGHV1OR15-1A0A075B7D0 117 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 DSCR9P59020 149 aa11.3□□□□□ -0.6
DDX56-201ENST00000258772 ZNF256Q9Y2P7 627 aaPredicted RBP11.3□□□□□ -0.6
DDX56-201ENST00000258772 SYNJ2BPP57105 145 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 ZNF56Q15929 161 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 SPINK13Q1W4C9 94 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 ZNF876PQ49A33 203 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 SPANXB1Q9NS25 103 aaPredicted RBP11.29□□□□□ -0.6
DDX56-201ENST00000258772 CFAP46Q8IYW2 2715 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 LINC01356Q8N9X3 169 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 ZNRF2Q8NHG8 242 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 PGPEP1Q9NXJ5 209 aa11.29□□□□□ -0.6
DDX56-201ENST00000258772 UBE2D1P51668 147 aa11.28□□□□□ -0.6
DDX56-201ENST00000258772 USP9XQ93008 2570 aaPredicted RBP11.28□□□□□ -0.6
DDX56-201ENST00000258772 A0A0J9YY99 117 aa11.27□□□□□ -0.6
DDX56-201ENST00000258772 GAGE13Q4V321 117 aa11.27□□□□□ -0.6
DDX56-201ENST00000258772 TMEM170BQ5T4T1 132 aa11.27□□□□□ -0.6
DDX56-201ENST00000258772 SPXQ9BT56 116 aa11.27□□□□□ -0.6
DDX56-201ENST00000258772 FLNCQ14315 2725 aa11.27□□□□□ -0.61
DDX56-201ENST00000258772 MRPL16Q9NX20 251 aaKnown RBP11.27□□□□□ -0.61
DDX56-201ENST00000258772 PRO0461Q9UI25 63 aa11.27□□□□□ -0.61
DDX56-201ENST00000258772 RHOHQ15669 191 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 NSUN5P1Q3KNT7 163 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 SH2D6Q7Z4S9 175 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 TRPT1Q86TN4 253 aaKnown RBP11.26□□□□□ -0.61
DDX56-201ENST00000258772 DUX5Q96PT3 197 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 TSPEAR-AS2P59090 65 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 ETDBQ3ZM63 59 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 CRYBG3Q68DQ2 2970 aa11.26□□□□□ -0.61
DDX56-201ENST00000258772 P0DMU3 169 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 FAM231AP0DMU4 169 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 FAM231CP0DMU5 169 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 USP9YO00507 2555 aaPredicted RBP11.25□□□□□ -0.61
DDX56-201ENST00000258772 A0A096LNT2 108 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 TGFAP01135 160 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 HOXD3P31249 432 aaPredicted RBP11.25□□□□□ -0.61
DDX56-201ENST00000258772 MTURNQ8N3F0 131 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 RNF152Q8N8N0 203 aa11.25□□□□□ -0.61
DDX56-201ENST00000258772 OPRPNQ99935 248 aaPredicted RBP11.25□□□□□ -0.61
DDX56-201ENST00000258772 ELANEP08246 267 aa11.24□□□□□ -0.61
DDX56-201ENST00000258772 J3QLI3 93 aa11.24□□□□□ -0.61
DDX56-201ENST00000258772 NFE4Q86UQ8 179 aa11.24□□□□□ -0.61
DDX56-201ENST00000258772 SLC25A29Q8N8R3 303 aa11.24□□□□□ -0.61
DDX56-201ENST00000258772 MAPK1IP1LQ8NDC0 245 aa11.24□□□□□ -0.61
DDX56-201ENST00000258772 CREBBPQ92793 2442 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 I3L3M4 83 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 J3QQQ9 107 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 APOMO95445 188 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 TSPAN13O95857 204 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 C20orf203Q8NBC4 194 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 UBE2E2Q96LR5 201 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 AMELXQ99217 191 aa11.23□□□□□ -0.61
DDX56-201ENST00000258772 VPREB3Q9UKI3 123 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms