RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SUMO4Q6EEV6 95 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 I3L3M4 83 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 RPL39P62891 51 aaKnown RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 Q6ZQT7 251 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 IGHV4-59P01825 116 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 DEFB136Q30KP8 78 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 C2orf91Q6ZV80 131 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 TRPT1Q86TN4 253 aaKnown RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 FOXI2Q6ZQN5 318 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 MRPL53Q96EL3 112 aaKnown RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 RNF185Q96GF1 192 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 SMAD5-AS1Q9Y6J3 95 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 U3KQK5 164 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 RHOHQ15669 191 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 RBX1P62877 108 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 TRBV20-1A0A075B6N2 111 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 PAX4O43316 350 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 LGALS1P09382 135 aaKnown RBP3.54□□□□□ -1.84
VPS13C-201ENST00000249837 TAL2Q16559 108 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 NDUFA12Q9UI09 145 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 A0A0J9YXV3 536 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 MSMBP08118 114 aa3.54□□□□□ -1.84
VPS13C-201ENST00000249837 RBAKDNA6NC62 111 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 G3V4G9 280 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 AJUBAQ96IF1 538 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 ATP6V0BQ99437 205 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 UNQ9165/PRO28630Q6UXU0 137 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 ZNF493Q6ZR52 646 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 CFC1BP0CG36 223 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 CFC1P0CG37 223 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 PTH2Q96A98 100 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 LY6LH3BQJ8 138 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 BAALCQ8WXS3 180 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 C20orf173Q96LM9 149 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 OPRPNQ99935 248 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-201ENST00000249837 C11orf86A6NJI1 115 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 F8W1H4 67 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 ZFP2Q6ZN57 461 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 PRIMA1Q86XR5 153 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 H3BMM0 161 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 UBE2WQ96B02 151 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 IGLC6P0CF74 106 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 MDFICQ9P1T7 246 aa3.53□□□□□ -1.84
VPS13C-201ENST00000249837 A4D1N5 150 aa3.53□□□□□ -1.85
VPS13C-201ENST00000249837 MORN3Q6PF18 240 aaPredicted RBP3.53□□□□□ -1.85
VPS13C-201ENST00000249837 MUSTN1Q8IVN3 82 aa3.53□□□□□ -1.85
VPS13C-201ENST00000249837 C5orf56Q8N8D9 126 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 U3KQE9 123 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 NTN5Q8WTR8 489 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-201ENST00000249837 DEFB112Q30KQ8 113 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 IGF2-ASQ6U949 168 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 PRO3102Q9H379 93 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 E9PLD3 99 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 C15orf53Q8NAA6 179 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 NRGNQ92686 78 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 INSP01308 110 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 PRR9Q5T870 116 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 IGHV4-30-2A0A087WSY4 118 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 GAGE12JA6NER3 117 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 RS1O15537 224 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 GAGE4Q13068 117 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 GAGE5Q13069 117 aa3.52□□□□□ -1.85
VPS13C-201ENST00000249837 SPAG8Q99932 426 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-201ENST00000249837 C9orf47Q6ZRZ4 202 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 LINC01356Q8N9X3 169 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 ZNF48Q96MX3 618 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-201ENST00000249837 SPANXB1Q9NS25 103 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-201ENST00000249837 AKAP13Q12802 2813 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 ODF3BA8MYP8 253 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 NSUN5P1Q3KNT7 163 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 SLC25A20O43772 301 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 GAGE2AQ6NT46 116 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 RPL36AP83881 106 aaKnown RBP3.51□□□□□ -1.85
VPS13C-201ENST00000249837 ZNRF2Q8NHG8 242 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 RPL36ALQ969Q0 106 aaKnown RBP3.51□□□□□ -1.85
VPS13C-201ENST00000249837 C11orf21Q9P2W6 132 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 LENEPQ9Y5L5 61 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 GAGE6Q13070 117 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 CRPP02741 224 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 TOMM6Q96B49 74 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 LEPROTO15243 131 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 FSTL3O95633 263 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 HOXD3P31249 432 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-201ENST00000249837 CFAP161Q6P656 301 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 DAND5Q8N907 189 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 NRACQ8N912 160 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 C1QTNF4Q9BXJ3 329 aa3.51□□□□□ -1.85
VPS13C-201ENST00000249837 TRAV12-1A0A0B4J245 112 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 PRSS47A8MTI9 375 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 CCDC140Q96MF4 163 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 LMO4P61968 165 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 FLNBO75369 2602 aaKnown RBP3.5□□□□□ -1.85
VPS13C-201ENST00000249837 C3orf56Q8N813 242 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 DSCR9P59020 149 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 ZFAND3Q9H8U3 227 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 DEFB130BP0DP73 79 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 DEFB130AP0DP74 79 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 SLURP1P55000 103 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 P0DMU3 169 aa3.5□□□□□ -1.85
VPS13C-201ENST00000249837 FAM231AP0DMU4 169 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms