RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 RBMY1DP0C7P1 496 aaKnown RBP16.61■□□□□ 0.25
CDX1-201ENST00000231656 BEAN1Q3B7T3 259 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 C14orf178Q8N769 122 aaPredicted RBP16.61■□□□□ 0.25
CDX1-201ENST00000231656 C9orf85Q96MD7 179 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 IGLV2-18A0A075B6J9 118 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 DEFA6Q01524 100 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 AP1S3Q96PC3 154 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 PKD1L1Q8TDX9 2849 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 HBDP02042 147 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 IGLL1P15814 213 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 PET117Q6UWS5 81 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 ATOH7Q8N100 152 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 Q8N8P6 123 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 C14orf144Q96I85 54 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 NDUFAF3Q9BU61 184 aa16.6■□□□□ 0.25
CDX1-201ENST00000231656 FXYD7P58549 80 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 Q8N1Y9 231 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 KIF25-AS1Q9Y6Z4 181 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 RBMY1A1P0DJD3 496 aaKnown RBP16.59■□□□□ 0.25
CDX1-201ENST00000231656 RBMY1CP0DJD4 496 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 RBMY1FQ15415 496 aaKnown RBP16.59■□□□□ 0.25
CDX1-201ENST00000231656 POM121L12Q8N7R1 296 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 MDFICQ9P1T7 246 aa16.59■□□□□ 0.25
CDX1-201ENST00000231656 CMYA5Q8N3K9 4069 aa16.58■□□□□ 0.24
CDX1-201ENST00000231656 OR11H12B2RN74 326 aa16.58■□□□□ 0.24
CDX1-201ENST00000231656 SPATA45Q537H7 98 aa16.58■□□□□ 0.24
CDX1-201ENST00000231656 C20orf202A1L168 122 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 LINC00315P59091 139 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 TRAV9-2A0A087WT02 112 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 WIPF1O43516 503 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 CMC4P56277 68 aaPredicted RBP16.56■□□□□ 0.24
CDX1-201ENST00000231656 CTAG1AP78358 180 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 MAJINQ3KP22 176 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 RASL10AQ92737 203 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 FAM110AQ9BQ89 295 aa16.56■□□□□ 0.24
CDX1-201ENST00000231656 MGPP08493 103 aa16.55■□□□□ 0.24
CDX1-201ENST00000231656 LINC01545Q5VT33 79 aa16.55■□□□□ 0.24
CDX1-201ENST00000231656 FCER1GP30273 86 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 MIEN1Q9BRT3 115 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 C19orf73Q9NVV2 129 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 TRGV11A0A075B6L2 103 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 ZNF705AQ6ZN79 300 aaPredicted RBP16.54■□□□□ 0.24
CDX1-201ENST00000231656 CLUHP3Q96NS8 147 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 JPT2Q9H910 190 aa16.54■□□□□ 0.24
CDX1-201ENST00000231656 RPL39LQ96EH5 51 aaKnown RBP16.52■□□□□ 0.24
CDX1-201ENST00000231656 C20orf78Q9BR46 151 aa16.52■□□□□ 0.24
CDX1-201ENST00000231656 SMIM2Q9BVW6 85 aa16.52■□□□□ 0.24
CDX1-201ENST00000231656 H0Y8G0 127 aa16.51■□□□□ 0.23
CDX1-201ENST00000231656 SYT8Q8NBV8 401 aa16.51■□□□□ 0.23
CDX1-201ENST00000231656 WFDC10AQ9H1F0 79 aa16.51■□□□□ 0.23
CDX1-201ENST00000231656 SMIM17P0DL12 118 aa16.51■□□□□ 0.23
CDX1-201ENST00000231656 CBY3A6NI87 242 aa16.5■□□□□ 0.23
CDX1-201ENST00000231656 SUMO2P61956 95 aaKnown RBP16.5■□□□□ 0.23
CDX1-201ENST00000231656 IGLC3P0DOY3 106 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 LAGE3Q14657 143 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 OXLD1Q5BKU9 147 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 GTSCR1Q86UQ5 136 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 STHQ8IWL8 128 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 IFI27L1Q96BM0 104 aa16.49■□□□□ 0.23
CDX1-201ENST00000231656 A0A087WWL8 130 aa16.48■□□□□ 0.23
CDX1-201ENST00000231656 TCAPO15273 167 aa16.48■□□□□ 0.23
CDX1-201ENST00000231656 PPP1R17O96001 155 aa16.48■□□□□ 0.23
CDX1-201ENST00000231656 PMCHL2Q9BQD1 86 aa16.48■□□□□ 0.23
CDX1-201ENST00000231656 SUMO4Q6EEV6 95 aa16.47■□□□□ 0.23
CDX1-201ENST00000231656 TRPT1Q86TN4 253 aaKnown RBP16.47■□□□□ 0.23
CDX1-201ENST00000231656 LINC00467Q9BRT7 94 aa16.47■□□□□ 0.23
CDX1-201ENST00000231656 LGALS9BQ3B8N2 356 aa16.46■□□□□ 0.23
CDX1-201ENST00000231656 LGALS9CQ6DKI2 356 aa16.46■□□□□ 0.23
CDX1-201ENST00000231656 hDV102S1A0JD36 115 aa16.46■□□□□ 0.22
CDX1-201ENST00000231656 CRYGDP07320 174 aa16.46■□□□□ 0.22
CDX1-201ENST00000231656 UQCR10Q9UDW1 63 aa16.46■□□□□ 0.22
CDX1-201ENST00000231656 INSP01308 110 aa16.45■□□□□ 0.22
CDX1-201ENST00000231656 RIPPLY3P57055 190 aa16.45■□□□□ 0.22
CDX1-201ENST00000231656 C18orf15Q96N68 181 aa16.45■□□□□ 0.22
CDX1-201ENST00000231656 ZNF876PQ49A33 203 aa16.44■□□□□ 0.22
CDX1-201ENST00000231656 ST20Q9HBF5 79 aa16.43■□□□□ 0.22
CDX1-201ENST00000231656 K7EMI3 77 aa16.43■□□□□ 0.22
CDX1-201ENST00000231656 HTN1P15515 57 aa16.43■□□□□ 0.22
CDX1-201ENST00000231656 RPL32P62910 135 aaKnown RBP16.43■□□□□ 0.22
CDX1-201ENST00000231656 PRM2P04554 102 aa16.42■□□□□ 0.22
CDX1-201ENST00000231656 FAM74A4Q5TZK3 123 aa16.42■□□□□ 0.22
CDX1-201ENST00000231656 GOLT1BQ9Y3E0 138 aa16.42■□□□□ 0.22
CDX1-201ENST00000231656 F5H697 171 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 ORMDL2Q53FV1 153 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 LINC01587Q99440 93 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 CSTL1Q9H114 145 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 NUDT3O95989 172 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 ZNF415Q09FC8 603 aa16.41■□□□□ 0.22
CDX1-201ENST00000231656 HSBP1L1C9JCN9 74 aa16.4■□□□□ 0.22
CDX1-201ENST00000231656 EREGO14944 169 aa16.4■□□□□ 0.22
CDX1-201ENST00000231656 EGFEM1PQ0D2K5 195 aa16.4■□□□□ 0.22
CDX1-201ENST00000231656 C11orf72Q8NBR9 251 aa16.4■□□□□ 0.22
CDX1-201ENST00000231656 PTH2Q96A98 100 aa16.4■□□□□ 0.22
CDX1-201ENST00000231656 TRBV6-5A0A0K0K1A5 114 aa16.39■□□□□ 0.21
CDX1-201ENST00000231656 ATP5LO75964 103 aa16.39■□□□□ 0.21
CDX1-201ENST00000231656 RPL35AP18077 110 aaKnown RBP16.39■□□□□ 0.21
CDX1-201ENST00000231656 POLR2KP53803 58 aaKnown RBP16.39■□□□□ 0.21
CDX1-201ENST00000231656 NUTF2P61970 127 aaKnown RBP16.39■□□□□ 0.21
CDX1-201ENST00000231656 SNHG12Q9BXW3 62 aa16.39■□□□□ 0.21
CDX1-201ENST00000231656 XCL2Q9UBD3 114 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms