RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 PHLDA1Q8WV24 401 aaPredicted RBP16.3■□□□□ 0.2
SMARCD2-201ENST00000225742 MDFICQ9P1T7 246 aa16.3■□□□□ 0.2
SMARCD2-201ENST00000225742 TP53TG1Q9Y2A0 90 aa16.3■□□□□ 0.2
SMARCD2-201ENST00000225742 SDHAF1A6NFY7 115 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 PMVKQ15126 192 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 AMTNQ6UX39 209 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 SPCS1Q9Y6A9 102 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 TRAV12-2A0A075B6T6 113 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 HOXA3O43365 443 aaPredicted RBP16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 IGKV3-20P01619 116 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 RHOHQ15669 191 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 SPINK13Q1W4C9 94 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 NEGR1Q7Z3B1 354 aa16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 TRPT1Q86TN4 253 aaKnown RBP16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 ZNF256Q9Y2P7 627 aaPredicted RBP16.29■□□□□ 0.2
SMARCD2-201ENST00000225742 CRYGDP07320 174 aa16.28■□□□□ 0.2
SMARCD2-201ENST00000225742 TCTEX1D4Q5JR98 221 aa16.28■□□□□ 0.2
SMARCD2-201ENST00000225742 HIST1H4GQ99525 98 aa16.28■□□□□ 0.2
SMARCD2-201ENST00000225742 SPG11Q96JI7 2443 aa16.27■□□□□ 0.2
SMARCD2-201ENST00000225742 TRBV7-3A0A075B6L6 115 aa16.27■□□□□ 0.2
SMARCD2-201ENST00000225742 A8MTW9 85 aa16.27■□□□□ 0.2
SMARCD2-201ENST00000225742 M0QY20 66 aa16.27■□□□□ 0.2
SMARCD2-201ENST00000225742 DEFB113Q30KQ7 82 aa16.27■□□□□ 0.2
SMARCD2-201ENST00000225742 TSHBP01222 138 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 HERVK_113P61574 105 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 PRADC1Q9BSG0 188 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 NHP2Q9NX24 153 aaKnown RBP16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 CFAP46Q8IYW2 2715 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 K7ERU9 68 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 ZNF56Q15929 161 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 NSUN5P1Q3KNT7 163 aa16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 NAA38Q9BRA0 125 aaKnown RBP16.26■□□□□ 0.19
SMARCD2-201ENST00000225742 CSPG4Q6UVK1 2322 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 PRB1P04280 392 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 FAM74A4Q5TZK3 123 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 EDA2RQ9HAV5 297 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 PEMTQ9UBM1 199 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 USP9XQ93008 2570 aaPredicted RBP16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 CR1P17927 2039 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 IGLV4-69A0A075B6H9 119 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 DUX5Q96PT3 197 aa16.24■□□□□ 0.19
SMARCD2-201ENST00000225742 IGSF10Q6WRI0 2623 aa16.23■□□□□ 0.19
SMARCD2-201ENST00000225742 C12orf74Q32Q52 190 aa16.23■□□□□ 0.19
SMARCD2-201ENST00000225742 Q5PR19 223 aa16.23■□□□□ 0.19
SMARCD2-201ENST00000225742 MORN3Q6PF18 240 aaPredicted RBP16.23■□□□□ 0.19
SMARCD2-201ENST00000225742 A0A1B0GWB2 263 aa16.22■□□□□ 0.19
SMARCD2-201ENST00000225742 PRRC2AP48634 2157 aaKnown RBP16.22■□□□□ 0.19
SMARCD2-201ENST00000225742 K7ERJ3 54 aa16.22■□□□□ 0.19
SMARCD2-201ENST00000225742 ZNF876PQ49A33 203 aa16.22■□□□□ 0.19
SMARCD2-201ENST00000225742 ZNF843Q8N446 348 aa16.22■□□□□ 0.19
SMARCD2-201ENST00000225742 C11orf86A6NJI1 115 aa16.21■□□□□ 0.19
SMARCD2-201ENST00000225742 IGLL5B9A064 214 aa16.21■□□□□ 0.19
SMARCD2-201ENST00000225742 SCGB2A2Q13296 93 aa16.21■□□□□ 0.19
SMARCD2-201ENST00000225742 PIK3CD-AS1Q5SR53 167 aa16.21■□□□□ 0.19
SMARCD2-201ENST00000225742 C4orf3Q8WVX3 66 aa16.21■□□□□ 0.19
SMARCD2-201ENST00000225742 ZNF815PA8K554 130 aa16.2■□□□□ 0.18
SMARCD2-201ENST00000225742 SLURP1P55000 103 aa16.2■□□□□ 0.18
SMARCD2-201ENST00000225742 RPL39P62891 51 aaKnown RBP16.2■□□□□ 0.18
SMARCD2-201ENST00000225742 SVEP1Q4LDE5 3571 aa16.2■□□□□ 0.18
SMARCD2-201ENST00000225742 I3L3M4 83 aa16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 TMEM86BQ8N661 226 aa16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 PTH2Q96A98 100 aa16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 BBC3Q96PG8 261 aaPredicted RBP16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 RNF151Q2KHN1 245 aa16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 TEX29Q8N6K0 151 aa16.19■□□□□ 0.18
SMARCD2-201ENST00000225742 H3BMM0 161 aa16.18■□□□□ 0.18
SMARCD2-201ENST00000225742 DEFB131AP59861 70 aa16.18■□□□□ 0.18
SMARCD2-201ENST00000225742 KRTAP10-9P60411 292 aa16.18■□□□□ 0.18
SMARCD2-201ENST00000225742 TMEM238LA0A1B0GVL6 79 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 A6NJY4 79 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 KNCNA6PVL3 124 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 SPAG8Q99932 426 aaPredicted RBP16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 CD300EQ496F6 205 aaPredicted RBP16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 NFE4Q86UQ8 179 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 ZNF479Q96JC4 524 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 LINC00467Q9BRT7 94 aa16.17■□□□□ 0.18
SMARCD2-201ENST00000225742 C20orf203Q8NBC4 194 aa16.16■□□□□ 0.18
SMARCD2-201ENST00000225742 RRN3P1Q2M238 152 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 SCGB1D4Q6XE38 83 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 Q96MF0 132 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 FLNCQ14315 2725 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 ANKRD17O75179 2603 aaKnown RBP16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 RBMY1A1P0DJD3 496 aaKnown RBP16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 RBMY1CP0DJD4 496 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 RBMY1FQ15415 496 aaKnown RBP16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 C18orf65Q6ZTR6 163 aa16.15■□□□□ 0.18
SMARCD2-201ENST00000225742 A8MWV9 139 aa16.14■□□□□ 0.17
SMARCD2-201ENST00000225742 DEFB136Q30KP8 78 aa16.14■□□□□ 0.17
SMARCD2-201ENST00000225742 P0DMU3 169 aa16.13■□□□□ 0.17
SMARCD2-201ENST00000225742 FAM231AP0DMU4 169 aa16.13■□□□□ 0.17
SMARCD2-201ENST00000225742 FAM231CP0DMU5 169 aa16.13■□□□□ 0.17
SMARCD2-201ENST00000225742 VPS25Q9BRG1 176 aa16.13■□□□□ 0.17
SMARCD2-201ENST00000225742 M0R2P5 195 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 ZNF415Q09FC8 603 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 SPANXB1Q9NS25 103 aaPredicted RBP16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 AGRNO00468 2067 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 TMEM170BQ5T4T1 132 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 TMEM61Q8N0U2 210 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 ZNRF2Q8NHG8 242 aa16.12■□□□□ 0.17
SMARCD2-201ENST00000225742 DYNLRB2Q8TF09 96 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms