RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 SCRT2Q9NQ03 307 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 NPYP01303 97 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 HBDP02042 147 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 RNASE4P34096 147 aaKnown RBP13.75□□□□□ -0.21
CLN3-263ENST00000637871 SSTP61278 116 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 PRR31Q5SQ13 230 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 DPF1Q92782 380 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 C2orf88Q9BSF0 95 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 IGKV3-7A0A075B6H7 116 aa13.74□□□□□ -0.21
CLN3-263ENST00000637871 M0R143 59 aa13.74□□□□□ -0.21
CLN3-263ENST00000637871 TNFRSF6BO95407 300 aa13.74□□□□□ -0.21
CLN3-263ENST00000637871 PPP1R17O96001 155 aa13.74□□□□□ -0.21
CLN3-263ENST00000637871 ANXA2RQ3ZCQ2 193 aa13.74□□□□□ -0.21
CLN3-263ENST00000637871 A0A0J9YX75 114 aa13.73□□□□□ -0.21
CLN3-263ENST00000637871 LOC389332A0A1B0GUA5 103 aa13.73□□□□□ -0.21
CLN3-263ENST00000637871 OR4C46A6NHA9 309 aa13.73□□□□□ -0.21
CLN3-263ENST00000637871 HSBP1L1C9JCN9 74 aa13.73□□□□□ -0.21
CLN3-263ENST00000637871 WFDC3Q8IUB2 231 aa13.73□□□□□ -0.21
CLN3-263ENST00000637871 ANK2Q01484 3957 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 H3BVH4 76 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 IGLC3P0DOY3 106 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 PSMG4Q5JS54 123 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 LINC01545Q5VT33 79 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 FAM159AQ6UWV7 190 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 FOXI2Q6ZQN5 318 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 Q8N8P6 123 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 ST20Q9HBF5 79 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 PHLDA3Q9Y5J5 127 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 C7orf71A4D174 169 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 F6UB75 175 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 OR2K2Q8NGT1 345 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 DPH3P1Q9H4G8 78 aa13.72□□□□□ -0.21
CLN3-263ENST00000637871 K7EMI3 77 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 NXPH4O95158 308 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 CD28P10747 220 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 EVI2AP22794 236 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 TCTEX1D4Q5JR98 221 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 OR1N2Q8NGR9 330 aa13.71□□□□□ -0.22
CLN3-263ENST00000637871 M0R381 172 aa13.7□□□□□ -0.22
CLN3-263ENST00000637871 FCER1GP30273 86 aa13.7□□□□□ -0.22
CLN3-263ENST00000637871 C12orf54Q6X4T0 127 aa13.7□□□□□ -0.22
CLN3-263ENST00000637871 ZNF688P0C7X2 276 aa13.69□□□□□ -0.22
CLN3-263ENST00000637871 LGALS9BQ3B8N2 356 aa13.69□□□□□ -0.22
CLN3-263ENST00000637871 LGALS9CQ6DKI2 356 aa13.69□□□□□ -0.22
CLN3-263ENST00000637871 AP1S3Q96PC3 154 aa13.69□□□□□ -0.22
CLN3-263ENST00000637871 SMKR1H3BMG3 65 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 J3KRW8 73 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 NCR2O95944 276 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 EDN2P20800 178 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 LINC00173Q6ZV60 143 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 OR9G4Q8NGQ1 327 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 C20orf78Q9BR46 151 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 A0A096LNJ9 63 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 CDKN1BP46527 198 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 OR11H1Q8NG94 326 aa13.68□□□□□ -0.22
CLN3-263ENST00000637871 KHDC1LQ5JSQ8 128 aa13.67□□□□□ -0.22
CLN3-263ENST00000637871 POM121L12Q8N7R1 296 aa13.67□□□□□ -0.22
CLN3-263ENST00000637871 C3orf56Q8N813 242 aa13.67□□□□□ -0.22
CLN3-263ENST00000637871 CITED2Q99967 270 aaPredicted RBP13.67□□□□□ -0.22
CLN3-263ENST00000637871 MRPS16Q9Y3D3 137 aaKnown RBP13.67□□□□□ -0.22
CLN3-263ENST00000637871 A0A1W2PRX2 142 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 A8MTW9 85 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 RNASE3P12724 160 aaKnown RBP13.66□□□□□ -0.22
CLN3-263ENST00000637871 TFPI2P48307 235 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 DEFB1P60022 68 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 NRACQ8N912 160 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 IFI27L1Q96BM0 104 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 DNHD1Q96M86 4753 aa13.66□□□□□ -0.22
CLN3-263ENST00000637871 TRAV25A0A0B4J276 109 aa13.65□□□□□ -0.22
CLN3-263ENST00000637871 IGLL1P15814 213 aa13.65□□□□□ -0.22
CLN3-263ENST00000637871 KRTAP21-3Q3LHN1 58 aa13.65□□□□□ -0.22
CLN3-263ENST00000637871 Q6ZQT7 251 aa13.65□□□□□ -0.22
CLN3-263ENST00000637871 C18orf65Q6ZTR6 163 aa13.65□□□□□ -0.22
CLN3-263ENST00000637871 IGLV2-18A0A075B6J9 118 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 GNRH2O43555 120 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 ATP5LO75964 103 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 HNRNPA3P51991 378 aaKnown RBP13.64□□□□□ -0.23
CLN3-263ENST00000637871 SLURP1P55000 103 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 ATOH7Q8N100 152 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 CITED1Q99966 193 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 SNHG12Q9BXW3 62 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 LINC01549A6NIU2 74 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 SMIM17P0DL12 118 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 G0S2P27469 103 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 LAGE3Q14657 143 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 ADAMTSL5Q6ZMM2 481 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 Q6ZN92 141 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 SYT8Q8NBV8 401 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 KLHL30-AS1Q8NEE0 82 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 PMCHL2Q9BQD1 86 aa13.64□□□□□ -0.23
CLN3-263ENST00000637871 RPL32P62910 135 aaKnown RBP13.63□□□□□ -0.23
CLN3-263ENST00000637871 DYNLRB2Q8TF09 96 aa13.63□□□□□ -0.23
CLN3-263ENST00000637871 TIMM8BQ9Y5J9 83 aaPredicted RBP13.63□□□□□ -0.23
CLN3-263ENST00000637871 TRGV11A0A075B6L2 103 aa13.62□□□□□ -0.23
CLN3-263ENST00000637871 IGHV1OR15-1A0A075B7D0 117 aa13.62□□□□□ -0.23
CLN3-263ENST00000637871 TRAV12-3A0A0B4J271 114 aa13.62□□□□□ -0.23
CLN3-263ENST00000637871 NSUN5P1Q3KNT7 163 aa13.62□□□□□ -0.23
CLN3-263ENST00000637871 CD7P09564 240 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 ORMDL2Q53FV1 153 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 C9orf85Q96MD7 179 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms