RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 C9orf85Q96MD7 179 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 C18orf15Q96N68 181 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 BIN3Q9NQY0 253 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 HECTD4Q9Y4D8 3996 aa12.73□□□□□ -0.37
CLN3-243ENST00000635973 TRBV20OR9-2A0A075B6H5 130 aa12.73□□□□□ -0.37
CLN3-243ENST00000635973 IGLV2-8P01709 118 aa12.73□□□□□ -0.37
CLN3-243ENST00000635973 RASL10AQ92737 203 aa12.73□□□□□ -0.37
CLN3-243ENST00000635973 RPL19P84098 196 aaKnown RBP12.72□□□□□ -0.37
CLN3-243ENST00000635973 ZNF876PQ49A33 203 aa12.72□□□□□ -0.37
CLN3-243ENST00000635973 LINC00336Q6ZUF6 198 aa12.72□□□□□ -0.37
CLN3-243ENST00000635973 VPS13DQ5THJ4 4388 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 NDUFS6O75380 124 aaKnown RBP12.71□□□□□ -0.37
CLN3-243ENST00000635973 HOXA5P20719 270 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 PEA15Q15121 130 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 C15orf53Q8NAA6 179 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 SMIM7Q9BQ49 75 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 IL36BQ9NZH7 164 aa12.71□□□□□ -0.37
CLN3-243ENST00000635973 TRAV26-1A0A087WT03 109 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 A0A0J9YY99 117 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 P01737 135 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 SRP19P09132 144 aaKnown RBP12.7□□□□□ -0.38
CLN3-243ENST00000635973 SFTA3P0C7M3 94 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 ARMS2P0C7Q2 107 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 OR4C5Q8NGB2 326 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 PHLDA3Q9Y5J5 127 aa12.7□□□□□ -0.38
CLN3-243ENST00000635973 TRAV4A0A0B4J268 109 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 TRGV4A0A0C4DH28 118 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 M0R2N4 97 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 NUDT3O95989 172 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 DNLZQ5SXM8 178 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 SYT8Q8NBV8 401 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 OR2D3Q8NGH3 330 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 MUC4Q99102 2169 aa12.69□□□□□ -0.38
CLN3-243ENST00000635973 ZNF727A8MUV8 499 aa12.68□□□□□ -0.38
CLN3-243ENST00000635973 OCC1Q8TAD7 63 aa12.68□□□□□ -0.38
CLN3-243ENST00000635973 ZNF479Q96JC4 524 aa12.68□□□□□ -0.38
CLN3-243ENST00000635973 C19orf71A6NCJ1 209 aa12.67□□□□□ -0.38
CLN3-243ENST00000635973 CXCL1P09341 107 aa12.67□□□□□ -0.38
CLN3-243ENST00000635973 RPS20P60866 119 aaKnown RBP12.67□□□□□ -0.38
CLN3-243ENST00000635973 PTH2Q96A98 100 aa12.67□□□□□ -0.38
CLN3-243ENST00000635973 DNAH6Q9C0G6 4158 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 XKRY2A2RUG3 117 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 K7EN84 100 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 MED14OSP0DP75 135 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 SRSF3P84103 164 aaKnown RBP12.66□□□□□ -0.38
CLN3-243ENST00000635973 SLAQ13239 276 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 ZFP82Q8N141 532 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 SMDT1Q9H4I9 107 aa12.66□□□□□ -0.38
CLN3-243ENST00000635973 M0R381 172 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 PAX4O43316 350 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 IFITM2Q01629 132 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 FHL2Q14192 279 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 CLLU1Q5K131 121 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 TPPP3Q9BW30 176 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 PRO0255Q9UI72 69 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 HHLA3Q9XRX5 114 aa12.65□□□□□ -0.38
CLN3-243ENST00000635973 IGLV2-18A0A075B6J9 118 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 A8MWV9 139 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 C9JQL5 133 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 RS1O15537 224 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 GZMBP10144 247 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 RNF212Q495C1 297 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 FAM74A3Q4VXF1 159 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 PIK3CD-AS1Q5SR53 167 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 CFAP126Q5VTH2 177 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 NUDT10Q8NFP7 164 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 NUDT11Q96G61 164 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 RNASE7Q9H1E1 156 aaKnown RBP12.64□□□□□ -0.39
CLN3-243ENST00000635973 SCRT2Q9NQ03 307 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 LY96Q9Y6Y9 160 aa12.64□□□□□ -0.39
CLN3-243ENST00000635973 IGHV3-73A0A0B4J1V6 119 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 PRSS29PA6NIE9 313 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 CRYBA4P53673 196 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 DMRTA1Q5VZB9 504 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 ZNF575Q86XF7 245 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 RPP21Q9H633 154 aaKnown RBP12.63□□□□□ -0.39
CLN3-243ENST00000635973 KIAA1109Q2LD37 5005 aa12.63□□□□□ -0.39
CLN3-243ENST00000635973 H3BNG1 76 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 CIDEAO60543 219 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 ERVFC1-1P60608 527 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 SOHLH1Q5JUK2 328 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 SPANXN1Q5VSR9 72 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 LINC01551Q86U37 167 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 FER1L6-AS1Q8NA97 138 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 VSIG2Q96IQ7 327 aa12.62□□□□□ -0.39
CLN3-243ENST00000635973 MUC21A0A0G2JKD1 596 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 MUC21A0A140T8X8 626 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 SNAI2O43623 268 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 GATCO43716 136 aaKnown RBP12.61□□□□□ -0.39
CLN3-243ENST00000635973 OR5AL1P0C617 328 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 SSTP61278 116 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 TMEM241Q24JQ0 296 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 FAM74A4Q5TZK3 123 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 OR10AG1Q8NH19 301 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 ICOSQ9Y6W8 199 aa12.61□□□□□ -0.39
CLN3-243ENST00000635973 PCLOQ9Y6V0 5065 aa12.6□□□□□ -0.39
CLN3-243ENST00000635973 JPT2Q9H910 190 aa12.6□□□□□ -0.39
CLN3-243ENST00000635973 NAT8Q9UHE5 227 aa12.6□□□□□ -0.39
CLN3-243ENST00000635973 RHODO00212 210 aa12.59□□□□□ -0.39
CLN3-243ENST00000635973 GATA1P15976 413 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms