RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 RAB37Q96AX2 223 aa9.6□□□□□ -0.87
LINC00540-203ENST00000631321 RPL39LQ96EH5 51 aaKnown RBP9.6□□□□□ -0.87
LINC00540-203ENST00000631321 SCGB3A1Q96QR1 104 aa9.6□□□□□ -0.87
LINC00540-203ENST00000631321 RPL32P62910 135 aaKnown RBP9.6□□□□□ -0.87
LINC00540-203ENST00000631321 LCNL1Q6ZST4 164 aa9.6□□□□□ -0.87
LINC00540-203ENST00000631321 NAA38Q9BRA0 125 aaKnown RBP9.6□□□□□ -0.87
LINC00540-203ENST00000631321 KIF25-AS1Q9Y6Z4 181 aa9.6□□□□□ -0.87
LINC00540-203ENST00000631321 ZFHX3Q15911 3703 aa9.59□□□□□ -0.87
LINC00540-203ENST00000631321 IGHV4OR15-8A0A075B7B6 117 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 A0A087WW49 117 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 LINC01619G3V211 115 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 K7ERU9 68 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 FABP2P12104 132 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 LINC00315P59091 139 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 RNF151Q2KHN1 245 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 SAMD5Q5TGI4 173 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 DCANP1Q8TF63 244 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 CHTOPQ9Y3Y2 248 aaKnown RBP9.58□□□□□ -0.88
LINC00540-203ENST00000631321 SPCS1Q9Y6A9 102 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 MGPP08493 103 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 ID1P41134 155 aa9.58□□□□□ -0.88
LINC00540-203ENST00000631321 SPTAN1Q13813 2472 aaKnown RBP9.57□□□□□ -0.88
LINC00540-203ENST00000631321 AVPP01185 164 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 C2orf66Q6UXQ4 117 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 B4DSR2 109 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 PSMB8P28062 276 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 BAALCQ8WXS3 180 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 VPS13CQ709C8 3753 aa9.57□□□□□ -0.88
LINC00540-203ENST00000631321 IGKV3-7A0A075B6H7 116 aa9.56□□□□□ -0.88
LINC00540-203ENST00000631321 GATA3P23771 443 aa9.56□□□□□ -0.88
LINC00540-203ENST00000631321 ODF3Q96PU9 254 aa9.56□□□□□ -0.88
LINC00540-203ENST00000631321 CSTL1Q9H114 145 aa9.56□□□□□ -0.88
LINC00540-203ENST00000631321 NEGR1Q7Z3B1 354 aa9.56□□□□□ -0.88
LINC00540-203ENST00000631321 TMEM89A2RUT3 159 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 K7ERJ3 54 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 EDN2P20800 178 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 TRBV7-3A0A075B6L6 115 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 MYMXA0A1B0GTQ4 84 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 PRSS29PA6NIE9 313 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 LINC01549A6NIU2 74 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 OR11H12B2RN74 326 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 SRD5A1P18405 259 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 FAM159AQ6UWV7 190 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 OR11H1Q8NG94 326 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 OR11H2Q8NH07 326 aa9.55□□□□□ -0.88
LINC00540-203ENST00000631321 NHP2Q9NX24 153 aaKnown RBP9.55□□□□□ -0.88
LINC00540-203ENST00000631321 E9PLD3 99 aa9.54□□□□□ -0.88
LINC00540-203ENST00000631321 POLR2KP53803 58 aaKnown RBP9.54□□□□□ -0.88
LINC00540-203ENST00000631321 DSCR9P59020 149 aa9.54□□□□□ -0.88
LINC00540-203ENST00000631321 C21orf62-AS1Q17RA5 79 aa9.54□□□□□ -0.88
LINC00540-203ENST00000631321 VPS25Q9BRG1 176 aa9.54□□□□□ -0.88
LINC00540-203ENST00000631321 SAP30O75446 220 aa9.54□□□□□ -0.88
LINC00540-203ENST00000631321 A0A1B0GWB2 263 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 TMEM95Q3KNT9 176 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 C12orf74Q32Q52 190 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 SUMO4Q6EEV6 95 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 C9orf85Q96MD7 179 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 CYSLTR1Q9Y271 337 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 SELENOKQ9Y6D0 94 aa9.53□□□□□ -0.88
LINC00540-203ENST00000631321 IGLL5B9A064 214 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 HIST1H4GQ99525 98 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 CELSR1Q9NYQ6 3014 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 TRBV6-5A0A0K0K1A5 114 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 IGIPA6NJ69 53 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 G3V4G9 280 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 LGALS9O00182 355 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 CRYGDP07320 174 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 JPT2Q9H910 190 aa9.52□□□□□ -0.89
LINC00540-203ENST00000631321 MUC4Q99102 2169 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 PKD1L2Q7Z442 2459 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 IGHV3-16A0A0C4DH30 117 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 A0A0J9YX75 114 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 VCYO14598 125 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 DUSP14O95147 198 aaKnown RBP9.51□□□□□ -0.89
LINC00540-203ENST00000631321 TSHBP01222 138 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 IGHV4-59P01825 116 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 LGALS1P09382 135 aaKnown RBP9.51□□□□□ -0.89
LINC00540-203ENST00000631321 CD7P09564 240 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 DEFB112Q30KQ8 113 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 ZFP2Q6ZN57 461 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 PRADC1Q9BSG0 188 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 TRAV12-3A0A0B4J271 114 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 COX6B1P14854 86 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 RIPPLY3P57055 190 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 TMEM141Q96I45 108 aa9.51□□□□□ -0.89
LINC00540-203ENST00000631321 DOPEY1Q5JWR5 2465 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 K7EQG2 157 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 PAPPA-AS1Q5QFB9 102 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 TIMM17AQ99595 171 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 TP53TG1Q9Y2A0 90 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 IGLV4-69A0A075B6H9 119 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 A0A096LNT2 108 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 TRBV27A0A0K0K1C4 114 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 SNRPD3P62318 126 aaKnown RBP9.5□□□□□ -0.89
LINC00540-203ENST00000631321 FOXI2Q6ZQN5 318 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 RNF152Q8N8N0 203 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 LINC01356Q8N9X3 169 aa9.5□□□□□ -0.89
LINC00540-203ENST00000631321 A0A087WWL8 130 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 J3QLI3 93 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 ZNF688P0C7X2 276 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms