RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SPATA12Q7Z6I5 190 aa16.39■□□□□ 0.21
PNKP-220ENST00000627232 CCDC168Q8NDH2 2452 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 TRAV25A0A0B4J276 109 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 NDUFA7O95182 113 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 Q8N8P6 123 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 NRACQ8N912 160 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 MIEN1Q9BRT3 115 aa16.38■□□□□ 0.21
PNKP-220ENST00000627232 TRAV9-2A0A087WT02 112 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 CCL24O00175 119 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 IGKV3-20P01619 116 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 HLA-DRB4P13762 266 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 GATA1P15976 413 aaPredicted RBP16.37■□□□□ 0.21
PNKP-220ENST00000627232 DEFB131AP59861 70 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 AP1S3Q96PC3 154 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 JMJD8Q96S16 334 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 HLA-DRB4X5D2U9 266 aa16.37■□□□□ 0.21
PNKP-220ENST00000627232 CD7P09564 240 aa16.36■□□□□ 0.21
PNKP-220ENST00000627232 SPINK13Q1W4C9 94 aa16.36■□□□□ 0.21
PNKP-220ENST00000627232 SPAG8Q99932 426 aaPredicted RBP16.36■□□□□ 0.21
PNKP-220ENST00000627232 TLN2Q9Y4G6 2542 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 OR4C46A6NHA9 309 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 CITED2Q99967 270 aaPredicted RBP16.35■□□□□ 0.21
PNKP-220ENST00000627232 IGLV2-18A0A075B6J9 118 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 IGHV1OR15-1A0A075B7D0 117 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 NBPF19A0A087WUL8 3843 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 LINC01545Q5VT33 79 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 ZNF705AQ6ZN79 300 aaPredicted RBP16.35■□□□□ 0.21
PNKP-220ENST00000627232 POM121L12Q8N7R1 296 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 C9orf85Q96MD7 179 aa16.35■□□□□ 0.21
PNKP-220ENST00000627232 TRAV12-2A0A075B6T6 113 aa16.34■□□□□ 0.21
PNKP-220ENST00000627232 IGHV3-16A0A0C4DH30 117 aa16.34■□□□□ 0.21
PNKP-220ENST00000627232 KNCNA6PVL3 124 aa16.34■□□□□ 0.21
PNKP-220ENST00000627232 H3BMM0 161 aa16.34■□□□□ 0.21
PNKP-220ENST00000627232 ATOH7Q8N100 152 aa16.34■□□□□ 0.21
PNKP-220ENST00000627232 SONP18583 2426 aaKnown RBP16.33■□□□□ 0.2
PNKP-220ENST00000627232 A0A1W2PRX2 142 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 LY6G6DO95868 133 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 FCER1GP30273 86 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 CD300EQ496F6 205 aaPredicted RBP16.33■□□□□ 0.2
PNKP-220ENST00000627232 HIST2H2BDQ6DRA6 164 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 C14orf178Q8N769 122 aaPredicted RBP16.33■□□□□ 0.2
PNKP-220ENST00000627232 C11orf44Q8N8P7 122 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 MAP6D1Q9H9H5 199 aa16.33■□□□□ 0.2
PNKP-220ENST00000627232 TRAV26-2A0A0B4J265 109 aa16.32■□□□□ 0.2
PNKP-220ENST00000627232 SPRY2O43597 315 aa16.32■□□□□ 0.2
PNKP-220ENST00000627232 UNC79Q9P2D8 2635 aa16.32■□□□□ 0.2
PNKP-220ENST00000627232 ZNF469Q96JG9 3925 aaPredicted RBP16.31■□□□□ 0.2
PNKP-220ENST00000627232 SMR3AQ99954 134 aa16.31■□□□□ 0.2
PNKP-220ENST00000627232 AGRNO00468 2067 aa16.31■□□□□ 0.2
PNKP-220ENST00000627232 MUC4Q99102 2169 aa16.31■□□□□ 0.2
PNKP-220ENST00000627232 PPP1R17O96001 155 aa16.3■□□□□ 0.2
PNKP-220ENST00000627232 IGLC3P0DOY3 106 aa16.3■□□□□ 0.2
PNKP-220ENST00000627232 MRPL52Q86TS9 123 aaKnown RBP16.3■□□□□ 0.2
PNKP-220ENST00000627232 C20orf78Q9BR46 151 aa16.3■□□□□ 0.2
PNKP-220ENST00000627232 UQCR10Q9UDW1 63 aa16.3■□□□□ 0.2
PNKP-220ENST00000627232 ZNF256Q9Y2P7 627 aaPredicted RBP16.3■□□□□ 0.2
PNKP-220ENST00000627232 KIF25-AS1Q9Y6Z4 181 aa16.3■□□□□ 0.2
PNKP-220ENST00000627232 TRGV11A0A075B6L2 103 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 Q8N1Y9 231 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 SYT8Q8NBV8 401 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 CLUHP3Q96NS8 147 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 MGPP08493 103 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 SMIM17P0DL12 118 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 LBHQ53QV2 105 aaPredicted RBP16.29■□□□□ 0.2
PNKP-220ENST00000627232 RASL10AQ92737 203 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 IFI27L1Q96BM0 104 aa16.29■□□□□ 0.2
PNKP-220ENST00000627232 LGALS9BQ3B8N2 356 aa16.28■□□□□ 0.2
PNKP-220ENST00000627232 MAJINQ3KP22 176 aa16.28■□□□□ 0.2
PNKP-220ENST00000627232 LGALS9CQ6DKI2 356 aa16.28■□□□□ 0.2
PNKP-220ENST00000627232 SMIM2Q9BVW6 85 aa16.28■□□□□ 0.2
PNKP-220ENST00000627232 RBMY1BA6NDE4 496 aaKnown RBP16.27■□□□□ 0.2
PNKP-220ENST00000627232 RBMY1EA6NEQ0 496 aaKnown RBP16.27■□□□□ 0.2
PNKP-220ENST00000627232 RBMY1DP0C7P1 496 aaKnown RBP16.27■□□□□ 0.2
PNKP-220ENST00000627232 IGLL1P15814 213 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 PROK1P58294 105 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 FXYD7P58549 80 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 LINC00315P59091 139 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 LAGE3Q14657 143 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 ST20Q9HBF5 79 aa16.27■□□□□ 0.2
PNKP-220ENST00000627232 ITPR2Q14571 2701 aa16.27■□□□□ 0.19
PNKP-220ENST00000627232 K7EMI3 77 aa16.26■□□□□ 0.19
PNKP-220ENST00000627232 SUMO2P61956 95 aaKnown RBP16.26■□□□□ 0.19
PNKP-220ENST00000627232 MDFICQ9P1T7 246 aa16.26■□□□□ 0.19
PNKP-220ENST00000627232 MYO9AB2RTY4 2548 aa16.26■□□□□ 0.19
PNKP-220ENST00000627232 HSBP1L1C9JCN9 74 aa16.25■□□□□ 0.19
PNKP-220ENST00000627232 H0Y8G0 127 aa16.25■□□□□ 0.19
PNKP-220ENST00000627232 TMEM158Q8WZ71 300 aa16.25■□□□□ 0.19
PNKP-220ENST00000627232 RBMY1A1P0DJD3 496 aaKnown RBP16.24■□□□□ 0.19
PNKP-220ENST00000627232 RBMY1CP0DJD4 496 aa16.24■□□□□ 0.19
PNKP-220ENST00000627232 RPL32P62910 135 aaKnown RBP16.24■□□□□ 0.19
PNKP-220ENST00000627232 RBMY1FQ15415 496 aaKnown RBP16.24■□□□□ 0.19
PNKP-220ENST00000627232 ZNF124Q15973 351 aa16.24■□□□□ 0.19
PNKP-220ENST00000627232 LINC00467Q9BRT7 94 aa16.24■□□□□ 0.19
PNKP-220ENST00000627232 ACANP16112 2415 aa16.23■□□□□ 0.19
PNKP-220ENST00000627232 ADARB2-AS1A8MUL3 147 aa16.23■□□□□ 0.19
PNKP-220ENST00000627232 M0R143 59 aa16.23■□□□□ 0.19
PNKP-220ENST00000627232 CMC4P56277 68 aaPredicted RBP16.23■□□□□ 0.19
PNKP-220ENST00000627232 CBY3A6NI87 242 aa16.22■□□□□ 0.19
PNKP-220ENST00000627232 ODF3L2Q3SX64 289 aa16.22■□□□□ 0.19
PNKP-220ENST00000627232 RPL39LQ96EH5 51 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms