RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DDTP30046 118 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 DMRTA1Q5VZB9 504 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 FOXI2Q6ZQN5 318 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 HSPB8Q9UJY1 196 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 ZNF664Q8N3J9 261 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 K7EQG2 157 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 IGHV1OR15-1A0A075B7D0 117 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 TDRG1Q3Y452 100 aa11.82□□□□□ -0.52
CPSF1-213ENST00000620219 A0A0J9YX75 114 aa11.81□□□□□ -0.52
CPSF1-213ENST00000620219 CACNG7P62955 275 aa11.81□□□□□ -0.52
CPSF1-213ENST00000620219 PRR9Q5T870 116 aa11.81□□□□□ -0.52
CPSF1-213ENST00000620219 SPAG8Q99932 426 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-213ENST00000620219 DEFB114Q30KQ6 69 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 A0A1B0GXF2 115 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 LGALS9O00182 355 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 INSP01308 110 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 MYOZ3Q8TDC0 251 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 TRGV11A0A075B6L2 103 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 TRGV2A0A075B6R0 118 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 TRGV1A0A0A0MS02 117 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 LINC00173Q6ZV60 143 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 C14orf144Q96I85 54 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 LINC00310P59036 64 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 SPATA45Q537H7 98 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 Q6ZN92 141 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 C11orf21Q9P2W6 132 aa11.8□□□□□ -0.52
CPSF1-213ENST00000620219 DCANP1Q8TF63 244 aa11.79□□□□□ -0.52
CPSF1-213ENST00000620219 LENEPQ9Y5L5 61 aa11.79□□□□□ -0.52
CPSF1-213ENST00000620219 TMEM191AQ9H0A3 160 aa11.79□□□□□ -0.52
CPSF1-213ENST00000620219 TCAPO15273 167 aa11.79□□□□□ -0.52
CPSF1-213ENST00000620219 NPIPB6E9PJ23 425 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 NPYP01303 97 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 PRM2P04554 102 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 TMEM70Q9BUB7 260 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 DPH3P1Q9H4G8 78 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 IGHV3-16A0A0C4DH30 117 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 LINC01559Q495D7 138 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 ARL6IP6Q8N6S5 226 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 NEGR1Q7Z3B1 354 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 TRBV6-1A0A0K0K1D8 114 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 TNFRSF6BO95407 300 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 ZFAND2AQ8N6M9 145 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 WFDC10AQ9H1F0 79 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 MAP6D1Q9H9H5 199 aa11.78□□□□□ -0.52
CPSF1-213ENST00000620219 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.77□□□□□ -0.52
CPSF1-213ENST00000620219 PPBPP02775 128 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 Q8N1Y9 231 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 C12orf54Q6X4T0 127 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 KIR2DL4Q99706 377 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 JPT2Q9H910 190 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 MDFICQ9P1T7 246 aa11.77□□□□□ -0.53
CPSF1-213ENST00000620219 DGAT2L7PQ6IED9 249 aa11.76□□□□□ -0.53
CPSF1-213ENST00000620219 GOLT1BQ9Y3E0 138 aa11.76□□□□□ -0.53
CPSF1-213ENST00000620219 MAJINQ3KP22 176 aa11.76□□□□□ -0.53
CPSF1-213ENST00000620219 IGHV1-24A0A0C4DH33 117 aa11.76□□□□□ -0.53
CPSF1-213ENST00000620219 SNAI2O43623 268 aa11.76□□□□□ -0.53
CPSF1-213ENST00000620219 OR2K2Q8NGT1 345 aa11.75□□□□□ -0.53
CPSF1-213ENST00000620219 HTN3P15516 51 aa11.75□□□□□ -0.53
CPSF1-213ENST00000620219 TNFRSF18Q9Y5U5 241 aa11.75□□□□□ -0.53
CPSF1-213ENST00000620219 ZFHX3Q15911 3703 aa11.75□□□□□ -0.53
CPSF1-213ENST00000620219 HIVEP1P15822 2718 aa11.75□□□□□ -0.53
CPSF1-213ENST00000620219 BRI3O95415 125 aa11.74□□□□□ -0.53
CPSF1-213ENST00000620219 SIGLEC8Q9NYZ4 499 aa11.74□□□□□ -0.53
CPSF1-213ENST00000620219 KMT2BQ9UMN6 2715 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-213ENST00000620219 ZNF415Q09FC8 603 aa11.74□□□□□ -0.53
CPSF1-213ENST00000620219 ST20Q9HBF5 79 aa11.74□□□□□ -0.53
CPSF1-213ENST00000620219 MRPL16Q9NX20 251 aaKnown RBP11.74□□□□□ -0.53
CPSF1-213ENST00000620219 GAS8-AS1O95177 125 aa11.74□□□□□ -0.53
CPSF1-213ENST00000620219 DEFB130BP0DP73 79 aa11.73□□□□□ -0.53
CPSF1-213ENST00000620219 DEFB130AP0DP74 79 aa11.73□□□□□ -0.53
CPSF1-213ENST00000620219 HNRNPA3P51991 378 aaKnown RBP11.73□□□□□ -0.53
CPSF1-213ENST00000620219 KRTAP1-1Q07627 177 aa11.73□□□□□ -0.53
CPSF1-213ENST00000620219 ZMAT5Q9UDW3 170 aaKnown RBP11.73□□□□□ -0.53
CPSF1-213ENST00000620219 HBDP02042 147 aa11.73□□□□□ -0.53
CPSF1-213ENST00000620219 hDV102S1A0JD36 115 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 H3BMM0 161 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 CRLF1O75462 422 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 CHCHD1Q96BP2 118 aaKnown RBP11.72□□□□□ -0.53
CPSF1-213ENST00000620219 CSTL1Q9H114 145 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 NXT2Q9NPJ8 142 aaKnown RBP11.72□□□□□ -0.53
CPSF1-213ENST00000620219 DEFB125Q8N687 156 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 ZNF580Q9UK33 172 aa11.72□□□□□ -0.53
CPSF1-213ENST00000620219 COL6A5A8TX70 2615 aa11.71□□□□□ -0.53
CPSF1-213ENST00000620219 NMUP48645 174 aa11.71□□□□□ -0.53
CPSF1-213ENST00000620219 OR4C5Q8NGB2 326 aa11.71□□□□□ -0.53
CPSF1-213ENST00000620219 TMEM158Q8WZ71 300 aa11.71□□□□□ -0.53
CPSF1-213ENST00000620219 SCGB3A1Q96QR1 104 aa11.71□□□□□ -0.53
CPSF1-213ENST00000620219 HLA-DRB4P13762 266 aa11.71□□□□□ -0.54
CPSF1-213ENST00000620219 CTRLP40313 264 aa11.71□□□□□ -0.54
CPSF1-213ENST00000620219 CMC4P56277 68 aaPredicted RBP11.71□□□□□ -0.54
CPSF1-213ENST00000620219 Q8N2B8 174 aa11.71□□□□□ -0.54
CPSF1-213ENST00000620219 RPL39LQ96EH5 51 aaKnown RBP11.71□□□□□ -0.54
CPSF1-213ENST00000620219 HLA-DRB4X5D2U9 266 aa11.71□□□□□ -0.54
CPSF1-213ENST00000620219 NBPF19A0A087WUL8 3843 aa11.71□□□□□ -0.54
CPSF1-213ENST00000620219 PHLDA1Q8WV24 401 aaPredicted RBP11.7□□□□□ -0.54
CPSF1-213ENST00000620219 TMEM160Q9NX00 188 aa11.7□□□□□ -0.54
CPSF1-213ENST00000620219 SOCS3O14543 225 aa11.7□□□□□ -0.54
CPSF1-213ENST00000620219 IGLC6P0CF74 106 aa11.7□□□□□ -0.54
CPSF1-213ENST00000620219 CTAG1AP78358 180 aa11.7□□□□□ -0.54
CPSF1-213ENST00000620219 NIPBLQ6KC79 2804 aaeCLIP11.7□□□□□ -0.545e-8■□□□□ 8.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms