RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SNRPCP09234 159 aaKnown RBP4.24□□□□□ -1.73
CUX1-220ENST00000607092 ATP6V0CP27449 155 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 RAB2AP61019 212 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 PEA15Q15121 130 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 VWC2Q2TAL6 325 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 ACOT6Q3I5F7 207 aaPredicted RBP4.24□□□□□ -1.73
CUX1-220ENST00000607092 FAM74A1Q5RGS3 127 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 MIC13Q5XKP0 118 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 WFDC10BQ8IUB3 73 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 ZFAND2AQ8N6M9 145 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 NHLRC2Q8NBF2 726 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 NUDT10Q8NFP7 164 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 OR4C5Q8NGB2 326 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 OR2G3Q8NGZ4 309 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 NUDT11Q96G61 164 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 KCNS1Q96KK3 526 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 SMIM3Q9BZL3 60 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 MDFICQ9P1T7 246 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 ZNF492Q9P255 531 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 TMEM218A2RU14 115 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 M0R2P5 195 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 NDUFS6O75380 124 aaKnown RBP4.23□□□□□ -1.73
CUX1-220ENST00000607092 OXTP01178 125 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 NBEAP1P0C6P0 100 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 ERCC8Q13216 396 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 RHOHQ15669 191 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 C10orf91Q5T1B1 145 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 AKR1C8PQ5T2L2 129 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 HSD17B11Q8NBQ5 300 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 MBD3L1Q8WWY6 194 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 RMI2Q96E14 147 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 ZNF479Q96JC4 524 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 PRADC1Q9BSG0 188 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 WDR61Q9GZS3 305 aaKnown RBP4.23□□□□□ -1.73
CUX1-220ENST00000607092 TNFRSF18Q9Y5U5 241 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 HMCN2Q8NDA2 5059 aa4.23□□□□□ -1.73
CUX1-220ENST00000607092 TRAV21A0A0B4J279 112 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 UBE2L5PA0A1B0GUS4 154 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 LRCOL1A6NCL2 159 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 C17orf112F2Z3M2 114 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 NDUFB4O95168 129 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 TAGLN2P37802 199 aaKnown RBP4.22□□□□□ -1.73
CUX1-220ENST00000607092 ARL16Q0P5N6 197 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 OR10J3Q5JRS4 329 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 LELP1Q5T871 98 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 Q6AWC8 147 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 FAM122CQ6P4D5 195 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 ARL6IP6Q8N6S5 226 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 CMTM2Q8TAZ6 248 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 BLNKQ8WV28 456 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 SEC11CQ9BY50 192 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 OR51M1Q9H341 326 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 SDF2L1Q9HCN8 221 aa4.22□□□□□ -1.73
CUX1-220ENST00000607092 CARHSP1Q9Y2V2 147 aaKnown RBP4.22□□□□□ -1.73
CUX1-220ENST00000607092 IGKV2-40A0A087WW87 121 aaPredicted RBP4.21□□□□□ -1.74
CUX1-220ENST00000607092 A0A087WWC5 75 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TRBV6-4A0A1B0GX49 114 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 FBLL1A6NHQ2 334 aaKnown RBP4.21□□□□□ -1.74
CUX1-220ENST00000607092 IGKV2D-40P01614 121 aaPredicted RBP4.21□□□□□ -1.74
CUX1-220ENST00000607092 SFTA3P0C7M3 94 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 PYYP10082 97 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 PRB4P10163 310 aaPredicted RBP4.21□□□□□ -1.74
CUX1-220ENST00000607092 GATA1P15976 413 aaPredicted RBP4.21□□□□□ -1.74
CUX1-220ENST00000607092 FGF7P21781 194 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TAS2R45P59539 299 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TMEM183BQ1AE95 376 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 KHDC3LQ587J8 217 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 Q6ZSA8 131 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TMEM183AQ8IXX5 376 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 EXOC3-AS1Q8N2X6 119 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 SVBPQ8N300 66 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 ATP6V0E2Q8NHE4 81 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 PAXXQ9BUH6 204 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 Q9HAA7 133 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TREM1Q9NP99 234 aa4.21□□□□□ -1.74
CUX1-220ENST00000607092 TRAV8-1A0A0A6YYK1 113 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 SERTM2A0A1B0GWG4 89 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 RBFOX3A6NFN3 312 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 GGTLC3B5MD39 225 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 RS1O15537 224 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 OR7C2O60412 319 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 SNAPINO95295 136 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 APOC3P02656 99 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 MGST1P10620 155 aaKnown RBP4.2□□□□□ -1.74
CUX1-220ENST00000607092 FUSP35637 526 aaKnown RBP eCLIP4.2□□□□□ -1.745e-7■■■■□ 23.7
CUX1-220ENST00000607092 UBE2L3P68036 154 aaKnown RBP4.2□□□□□ -1.74
CUX1-220ENST00000607092 MUC21Q5SSG8 566 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 Q8N976 141 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 OR10G9Q8NGN4 311 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 FAM213BQ8TBF2 198 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 SUN5Q8TC36 379 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 NDFIP1Q9BT67 221 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 NPCDR1Q9BY65 106 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 ACTR3CQ9C0K3 210 aaPredicted RBP4.2□□□□□ -1.74
CUX1-220ENST00000607092 GTSF1LQ9H1H1 148 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 URGCP-MRPS24S4R325 110 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 DNAH8Q96JB1 4490 aa4.2□□□□□ -1.74
CUX1-220ENST00000607092 CTXND1A0A1B0GTU2 59 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 DIRC3C9JPN6 131 aa4.19□□□□□ -1.74
CUX1-220ENST00000607092 F8W036 122 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms