RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 SSNA1O43805 119 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 GCGP01275 180 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 Q8N976 141 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 OR10G9Q8NGN4 311 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 OR10G7Q8NGN6 311 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 SMIM3Q9BZL3 60 aa6.38□□□□□ -1.39
VRK3-224ENST00000601849 TRAV8-1A0A0A6YYK1 113 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 KRTAP29-1A8MX34 341 aaPredicted RBP6.37□□□□□ -1.39
VRK3-224ENST00000601849 H0YIZ8 118 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 MPC2O95563 127 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 MBP02144 154 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 ELOBQ15370 118 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 LGALSLQ3ZCW2 172 aaPredicted RBP6.37□□□□□ -1.39
VRK3-224ENST00000601849 ZFP2Q6ZN57 461 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 LINC00528Q8N1L1 170 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 C5orf17Q8NAS9 161 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 FAM30AQ9NZY2 134 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 PSG8Q9UQ74 426 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 ALG5Q9Y673 324 aa6.37□□□□□ -1.39
VRK3-224ENST00000601849 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.36□□□□□ -1.39
VRK3-224ENST00000601849 GAGE12JA6NER3 117 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 PGPEP1LA6NFU8 196 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 TCRAP04437 139 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 CDC34P49427 236 aaPredicted RBP6.36□□□□□ -1.39
VRK3-224ENST00000601849 GAGE1Q13065 139 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 GAGE4Q13068 117 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 GAGE5Q13069 117 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 GAGE13Q4V321 117 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 ZNF506Q5JVG8 444 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 PIK3CD-AS1Q5SR53 167 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 CYB561D1Q8N8Q1 229 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 TVP23CQ96ET8 276 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 SGK494Q96LW2 274 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 TMEM167BQ9NRX6 74 aa6.36□□□□□ -1.39
VRK3-224ENST00000601849 A0A087WX48 190 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 FABP5P3A8MUU1 101 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 LECT2O14960 151 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 HMGB3O15347 200 aaKnown RBP6.35□□□□□ -1.39
VRK3-224ENST00000601849 H2BFSP57053 126 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 SUMO1P63165 101 aaKnown RBP6.35□□□□□ -1.39
VRK3-224ENST00000601849 GNG5P63218 68 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 FLI1Q01543 452 aaPredicted RBP6.35□□□□□ -1.39
VRK3-224ENST00000601849 Q6ZSA8 131 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 PRNTQ86SH4 94 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 OR2T35Q8NGX2 323 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 C9orf85Q96MD7 179 aa6.35□□□□□ -1.39
VRK3-224ENST00000601849 IGKV2D-24A0A075B6R9 120 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 RHODO00212 210 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 EIF3GO75821 320 aaKnown RBP eCLIP6.34□□□□□ -1.39
VRK3-224ENST00000601849 CXorf1O96002 111 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 STAG3L2P0CL84 134 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 STAG3L3P0CL85 134 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 ARL14EPLP0DKL9 152 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 ASIPP42127 132 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 ZNF80P51504 273 aaPredicted RBP6.34□□□□□ -1.39
VRK3-224ENST00000601849 RAB2AP61019 212 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 C14orf177Q52M58 125 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 DPPA3Q6W0C5 159 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 DAZ4Q86SG3 579 aaKnown RBP6.34□□□□□ -1.39
VRK3-224ENST00000601849 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.34□□□□□ -1.39
VRK3-224ENST00000601849 TMEM75Q8N9X5 138 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 BAALCQ8WXS3 180 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 DAZ3Q9NR90 486 aaKnown RBP6.34□□□□□ -1.39
VRK3-224ENST00000601849 EPDR1Q9UM22 224 aa6.34□□□□□ -1.39
VRK3-224ENST00000601849 FLG2Q5D862 2391 aaPredicted RBP6.33□□□□□ -1.4
VRK3-224ENST00000601849 OXTP01178 125 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 SERF2P84101 59 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 Q0VG73 95 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 RAB24Q969Q5 203 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 CHCHD7Q9BUK0 85 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 CHAC1Q9BUX1 264 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 ACTR3CQ9C0K3 210 aaPredicted RBP6.33□□□□□ -1.4
VRK3-224ENST00000601849 MED28Q9H204 178 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 PARLQ9H300 379 aa6.33□□□□□ -1.4
VRK3-224ENST00000601849 RNF222A6NCQ9 220 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 IFNA7P01567 189 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 RNASE3P12724 160 aaKnown RBP6.32□□□□□ -1.4
VRK3-224ENST00000601849 GCHFRP30047 84 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 OR2G3Q8NGZ4 309 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 SUN5Q8TC36 379 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 PSMG3Q9BT73 122 aaPredicted RBP6.32□□□□□ -1.4
VRK3-224ENST00000601849 NKX6-2Q9C056 277 aaPredicted RBP6.32□□□□□ -1.4
VRK3-224ENST00000601849 IL36BQ9NZH7 164 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 C11orf21Q9P2W6 132 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 KLK12Q9UKR0 248 aa6.32□□□□□ -1.4
VRK3-224ENST00000601849 hCG_2014768A0A024R1R8 64 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 A0A1W2PRE2 83 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 B4DEV8 164 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 TMEM262E9PQX1 116 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 RPL36AP83881 106 aaKnown RBP6.31□□□□□ -1.4
VRK3-224ENST00000601849 WFDC2Q14508 124 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 DMRTA1Q5VZB9 504 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 SCXQ7RTU7 201 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 NIT1Q86X76 327 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 HSD17B11Q8NBQ5 300 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 OR11H4Q8NGC9 324 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 RPL36ALQ969Q0 106 aaKnown RBP6.31□□□□□ -1.4
VRK3-224ENST00000601849 UBE2WQ96B02 151 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 WFDC1Q9HC57 220 aa6.31□□□□□ -1.4
VRK3-224ENST00000601849 TNFSF18Q9UNG2 199 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms