RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 VAX2Q9UIW0 290 aa8.66□□□□□ -1.02
UPF1-203ENST00000594504 ABCA13Q86UQ4 5058 aa8.65□□□□□ -1.02
UPF1-203ENST00000594504 RPL35P42766 123 aaKnown RBP8.65□□□□□ -1.02
UPF1-203ENST00000594504 CRIP1P50238 77 aa8.65□□□□□ -1.02
UPF1-203ENST00000594504 ZNF674Q2M3X9 581 aa8.65□□□□□ -1.02
UPF1-203ENST00000594504 KRTAP1-5Q9BYS1 174 aa8.65□□□□□ -1.02
UPF1-203ENST00000594504 IGKV3D-20A0A0C4DH25 116 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 M0R2P5 195 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 SH2D1AO60880 128 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 ORM1P02763 201 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 ESRGQ1W209 222 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 NHLRC2Q8NBF2 726 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 RASL10AQ92737 203 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 DERL1Q9BUN8 251 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 MLST8Q9BVC4 326 aa8.64□□□□□ -1.03
UPF1-203ENST00000594504 B4DEV8 164 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 ASIPP42127 132 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 SPATA12Q7Z6I5 190 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 MAPKAPK5-AS1Q8N8E1 139 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 C9orf85Q96MD7 179 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 MED9Q9NWA0 146 aa8.63□□□□□ -1.03
UPF1-203ENST00000594504 RBFOX3A6NFN3 312 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 KRBOX1C9JBD0 128 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 M0R036 132 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 RNASE3P12724 160 aaKnown RBP8.62□□□□□ -1.03
UPF1-203ENST00000594504 S100A4P26447 101 aaKnown RBP8.62□□□□□ -1.03
UPF1-203ENST00000594504 LINC01559Q495D7 138 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 CENPWQ5EE01 88 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 TEX261Q6UWH6 196 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 SMIM12Q96EX1 92 aa8.62□□□□□ -1.03
UPF1-203ENST00000594504 H3BNG1 76 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 CDK2AP2O75956 126 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 IGHV3-53P01767 116 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 GNG4P50150 75 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 ZNF506Q5JVG8 444 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 DNLZQ5SXM8 178 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 PTH2Q96A98 100 aa8.61□□□□□ -1.03
UPF1-203ENST00000594504 TRAV4A0A0B4J268 109 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 RAB19A4D1S5 217 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 TMEM250H0YL14 139 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 KRTAP10-2P60368 255 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 SLAQ13239 276 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 ZNF876PQ49A33 203 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 PRR27Q6MZM9 219 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 IL36BQ9NZH7 164 aa8.6□□□□□ -1.03
UPF1-203ENST00000594504 HSPG2P98160 4391 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 TRBV20OR9-2A0A075B6H5 130 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 C9JCJ5 164 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 NDUFS6O75380 124 aaKnown RBP8.59□□□□□ -1.03
UPF1-203ENST00000594504 IGLV2-8P01709 118 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 FHL2Q14192 279 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 TOR2AQ5JU69 321 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 PIK3CD-AS1Q5SR53 167 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 OR4C5Q8NGB2 326 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 VSIG2Q96IQ7 327 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 ZNF479Q96JC4 524 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 FAM210AQ96ND0 272 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 EIF5A2Q9GZV4 153 aaKnown RBP8.59□□□□□ -1.03
UPF1-203ENST00000594504 PRO0255Q9UI72 69 aa8.59□□□□□ -1.03
UPF1-203ENST00000594504 TMSB15BA0A087X1C1 80 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 A0A096LPF7 62 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 TRGV4A0A0C4DH28 118 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 GRIFINA4D1Z8 144 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 PGPEP1LA6NFU8 196 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 H3BVH4 76 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 CIDEAO60543 219 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 CXCL1P09341 107 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 SFTA3P0C7M3 94 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 ARMS2P0C7Q2 107 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 MGST1P10620 155 aaKnown RBP8.58□□□□□ -1.04
UPF1-203ENST00000594504 FUSP35637 526 aaKnown RBP eCLIP8.58□□□□□ -1.04
UPF1-203ENST00000594504 UPK3BQ9BT76 320 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 BIN3Q9NQY0 253 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 HHLA3Q9XRX5 114 aa8.58□□□□□ -1.04
UPF1-203ENST00000594504 MRPS16Q9Y3D3 137 aaKnown RBP8.58□□□□□ -1.04
UPF1-203ENST00000594504 RS1O15537 224 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 PAX4O43316 350 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 CRYBA4P53673 196 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 RPL19P84098 196 aaKnown RBP8.57□□□□□ -1.04
UPF1-203ENST00000594504 Q8N1X5 172 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 SYT8Q8NBV8 401 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 DAZAP1Q96EP5 407 aaKnown RBP8.57□□□□□ -1.04
UPF1-203ENST00000594504 PARLQ9H300 379 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 SCRT2Q9NQ03 307 aa8.57□□□□□ -1.04
UPF1-203ENST00000594504 LRP1BQ9NZR2 4599 aa8.56□□□□□ -1.04
UPF1-203ENST00000594504 TTC32Q5I0X7 151 aa8.56□□□□□ -1.04
UPF1-203ENST00000594504 CFAP126Q5VTH2 177 aa8.56□□□□□ -1.04
UPF1-203ENST00000594504 PCNPQ8WW12 178 aaKnown RBP8.56□□□□□ -1.04
UPF1-203ENST00000594504 PHLDA3Q9Y5J5 127 aa8.56□□□□□ -1.04
UPF1-203ENST00000594504 TNFRSF18Q9Y5U5 241 aa8.56□□□□□ -1.04
UPF1-203ENST00000594504 C19orf71A6NCJ1 209 aa8.55□□□□□ -1.04
UPF1-203ENST00000594504 A8MWV9 139 aa8.55□□□□□ -1.04
UPF1-203ENST00000594504 LINC00315P59091 139 aa8.55□□□□□ -1.04
UPF1-203ENST00000594504 DMRTA1Q5VZB9 504 aa8.55□□□□□ -1.04
UPF1-203ENST00000594504 ICOSQ9Y6W8 199 aa8.55□□□□□ -1.04
UPF1-203ENST00000594504 A0A1W2PPQ1 181 aa8.54□□□□□ -1.04
UPF1-203ENST00000594504 P01737 135 aa8.54□□□□□ -1.04
UPF1-203ENST00000594504 SRP19P09132 144 aaKnown RBP8.54□□□□□ -1.04
UPF1-203ENST00000594504 GATA1P15976 413 aaPredicted RBP8.54□□□□□ -1.04
UPF1-203ENST00000594504 CEBPGP53567 150 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms