RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 GRIFINA4D1Z8 144 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 PGPEP1LA6NFU8 196 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 KRBOX1C9JBD0 128 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 K7EQD1 137 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 SIVA1O15304 175 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 ZNF506Q5JVG8 444 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 CFAP126Q5VTH2 177 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 PRR27Q6MZM9 219 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 LYPD5Q6UWN5 251 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 Q6ZR54 194 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 C6orf223Q8N319 242 aa7.54□□□□□ -1.2
CLIP3-203ENST00000586457 H3BVH4 76 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 RS1O15537 224 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 PDE6DO43924 150 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 NXPH4O95158 308 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 ARMS2P0C7Q2 107 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 MGST1P10620 155 aaKnown RBP7.53□□□□□ -1.2
CLIP3-203ENST00000586457 RNASE3P12724 160 aaKnown RBP7.53□□□□□ -1.2
CLIP3-203ENST00000586457 TAGLN2P37802 199 aaKnown RBP7.53□□□□□ -1.2
CLIP3-203ENST00000586457 RHOHQ15669 191 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 ZNF674Q2M3X9 581 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 PTH2Q96A98 100 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 C9orf85Q96MD7 179 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 UPK3BQ9BT76 320 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 IL36BQ9NZH7 164 aa7.53□□□□□ -1.2
CLIP3-203ENST00000586457 HYDINQ4G0P3 5121 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 TRBV6-4A0A1B0GX49 114 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 A0A1W2PPQ1 181 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 M0R381 172 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 EVI2AP22794 236 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 RPL35P42766 123 aaKnown RBP7.52□□□□□ -1.21
CLIP3-203ENST00000586457 CRIP1P50238 77 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 BLOC1S1P78537 153 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 CCL20P78556 96 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 MEF2BQ02080 365 aaPredicted RBP7.52□□□□□ -1.21
CLIP3-203ENST00000586457 COX8CQ7Z4L0 72 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 MED9Q9NWA0 146 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 BOLA1Q9Y3E2 137 aa7.52□□□□□ -1.21
CLIP3-203ENST00000586457 TRAV8-6A0A0B4J262 113 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 RTL8CO15255 209 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 GATA1P15976 413 aaPredicted RBP7.51□□□□□ -1.21
CLIP3-203ENST00000586457 GNG4P50150 75 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 LINC01559Q495D7 138 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 PIK3CD-AS1Q5SR53 167 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 FAM74A4Q5TZK3 123 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 ZFP2Q6ZN57 461 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 ZFP82Q8N141 532 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 C9orf62Q8N4C0 152 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 SLC25A29Q8N8R3 303 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 BIN3Q9NQY0 253 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 VAX2Q9UIW0 290 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 LY96Q9Y6Y9 160 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 NACAE9PAV3 2078 aa7.51□□□□□ -1.21
CLIP3-203ENST00000586457 MUC4Q99102 2169 aa7.5□□□□□ -1.21
CLIP3-203ENST00000586457 RHODO00212 210 aa7.5□□□□□ -1.21
CLIP3-203ENST00000586457 OR10J3Q5JRS4 329 aa7.5□□□□□ -1.21
CLIP3-203ENST00000586457 ALKAL2Q6UX46 152 aa7.5□□□□□ -1.21
CLIP3-203ENST00000586457 XKRY2A2RUG3 117 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 SMIM17P0DL12 118 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 BCL2P10415 239 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 BTF3P20290 206 aaKnown RBP7.49□□□□□ -1.21
CLIP3-203ENST00000586457 SSTP61278 116 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 CENPWQ5EE01 88 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 DNLZQ5SXM8 178 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 SPANXN1Q5VSR9 72 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 DMRTA1Q5VZB9 504 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 ATP6V0E2Q8NHE4 81 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 PARLQ9H300 379 aa7.49□□□□□ -1.21
CLIP3-203ENST00000586457 LOC100131303A0A0U1RQF7 123 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 K7EP13 123 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 EREGO14944 169 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 RPS20P60866 119 aaKnown RBP7.48□□□□□ -1.21
CLIP3-203ENST00000586457 NFE4Q86UQ8 179 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.48□□□□□ -1.21
CLIP3-203ENST00000586457 C11orf52Q96A22 123 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 TPPP3Q9BW30 176 aa7.48□□□□□ -1.21
CLIP3-203ENST00000586457 A0A087WWL8 130 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 RAB19A4D1S5 217 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GAGE12JA6NER3 117 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 F5H697 171 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 P01737 135 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 MED14OSP0DP75 135 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 CEBPGP53567 150 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GAGE1Q13065 139 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GAGE4Q13068 117 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GAGE5Q13069 117 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GAGE13Q4V321 117 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 C10orf126Q8N4M7 172 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 SMIM12Q96EX1 92 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 SFRP2Q96HF1 295 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 DERL1Q9BUN8 251 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 MLST8Q9BVC4 326 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 EIF5A2Q9GZV4 153 aaKnown RBP7.47□□□□□ -1.21
CLIP3-203ENST00000586457 GTSF1LQ9H1H1 148 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 KMT2AQ03164 3969 aa7.47□□□□□ -1.21
CLIP3-203ENST00000586457 VPS13DQ5THJ4 4388 aa7.46□□□□□ -1.21
CLIP3-203ENST00000586457 RBFOX3A6NFN3 312 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 CRYGDP07320 174 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 NKX2-5P52952 324 aaPredicted RBP7.46□□□□□ -1.22
CLIP3-203ENST00000586457 RPL19P84098 196 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms