RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 AP1S3Q96PC3 154 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 DPH3P1Q9H4G8 78 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 MAP6D1Q9H9H5 199 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 NXT2Q9NPJ8 142 aaKnown RBP10.53□□□□□ -0.72
LIG3-205ENST00000585941 TIMM8BQ9Y5J9 83 aaPredicted RBP10.53□□□□□ -0.72
LIG3-205ENST00000585941 OTOGQ6ZRI0 2925 aa10.52□□□□□ -0.72
LIG3-205ENST00000585941 IGHV1OR15-1A0A075B7D0 117 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 M0R381 172 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 CD7P09564 240 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 IFI27P40305 119 aaPredicted RBP10.52□□□□□ -0.73
LIG3-205ENST00000585941 SPINK13Q1W4C9 94 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 DEFB125Q8N687 156 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 TMEM70Q9BUB7 260 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 AGRNO00468 2067 aa10.52□□□□□ -0.73
LIG3-205ENST00000585941 LOC389332A0A1B0GUA5 103 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 SMKR1H3BMG3 65 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 TNFRSF6BO95407 300 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 NCR2O95944 276 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 PMCHL1Q16048 86 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 ZNF664Q8N3J9 261 aa10.51□□□□□ -0.73
LIG3-205ENST00000585941 ZNF256Q9Y2P7 627 aaPredicted RBP10.51□□□□□ -0.73
LIG3-205ENST00000585941 TRGV11A0A075B6L2 103 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 LINC01546A6NGU7 62 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 KNCNA6PVL3 124 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 PRSS47A8MTI9 375 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 INAFM1C9JVW0 142 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 NDUFA11Q86Y39 141 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 Q8N976 141 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 OR2K2Q8NGT1 345 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 TRAV12-2A0A075B6T6 113 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 CRXO43186 299 aaPredicted RBP10.5□□□□□ -0.73
LIG3-205ENST00000585941 PPP1R17O96001 155 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 HIST2H2BDQ6DRA6 164 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 VAMP8Q9BV40 100 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 MAP1LC3CQ9BXW4 147 aa10.5□□□□□ -0.73
LIG3-205ENST00000585941 WNK1Q9H4A3 2382 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 IGHV3-16A0A0C4DH30 117 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 C20orf202A1L168 122 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 ADARB2-AS1A8MUL3 147 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 SYT8Q8NBV8 401 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 C9orf85Q96MD7 179 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 C20orf144Q9BQM9 153 aa10.49□□□□□ -0.73
LIG3-205ENST00000585941 SETD2Q9BYW2 2564 aaPredicted RBP10.49□□□□□ -0.73
LIG3-205ENST00000585941 SMIM17P0DL12 118 aa10.48□□□□□ -0.73
LIG3-205ENST00000585941 PET117Q6UWS5 81 aa10.48□□□□□ -0.73
LIG3-205ENST00000585941 Q8N8P6 123 aa10.48□□□□□ -0.73
LIG3-205ENST00000585941 PRO1933Q9H354 126 aa10.48□□□□□ -0.73
LIG3-205ENST00000585941 NSD1Q96L73 2696 aaPredicted RBP10.47□□□□□ -0.73
LIG3-205ENST00000585941 KIR2DL5BA0A0G2JN68 375 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 KIR2DL5BA0A0G2JPC4 375 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 LINC00587B1AMM8 73 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 SYS1-DBNDD2H3BUS1 97 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 HBDP02042 147 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 DDTP30046 118 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 KIR2DL5AQ8N109 375 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 Q8N1Y9 231 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 NRACQ8N912 160 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 MUC4Q99102 2169 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 OR11H12B2RN74 326 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 CRLF1O75462 422 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 NSUN5P1Q3KNT7 163 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 C14orf178Q8N769 122 aaPredicted RBP10.47□□□□□ -0.73
LIG3-205ENST00000585941 POM121L12Q8N7R1 296 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 FAM110AQ9BQ89 295 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 C20orf78Q9BR46 151 aa10.47□□□□□ -0.73
LIG3-205ENST00000585941 SETXQ7Z333 2677 aaKnown RBP10.46□□□□□ -0.73
LIG3-205ENST00000585941 SAP30O75446 220 aa10.46□□□□□ -0.74
LIG3-205ENST00000585941 ODF3L2Q3SX64 289 aa10.46□□□□□ -0.74
LIG3-205ENST00000585941 SPATA12Q7Z6I5 190 aa10.46□□□□□ -0.74
LIG3-205ENST00000585941 LINC00467Q9BRT7 94 aa10.46□□□□□ -0.74
LIG3-205ENST00000585941 ZNF747Q9BV97 191 aa10.46□□□□□ -0.74
LIG3-205ENST00000585941 RBMY1BA6NDE4 496 aaKnown RBP10.45□□□□□ -0.74
LIG3-205ENST00000585941 RBMY1EA6NEQ0 496 aaKnown RBP10.45□□□□□ -0.74
LIG3-205ENST00000585941 CBY3A6NI87 242 aa10.45□□□□□ -0.74
LIG3-205ENST00000585941 K7EMI3 77 aa10.45□□□□□ -0.74
LIG3-205ENST00000585941 IGLV1-51P01701 117 aa10.45□□□□□ -0.74
LIG3-205ENST00000585941 RBMY1DP0C7P1 496 aaKnown RBP10.45□□□□□ -0.74
LIG3-205ENST00000585941 STHQ8IWL8 128 aa10.45□□□□□ -0.74
LIG3-205ENST00000585941 A0A096LNJ9 63 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 GAS8-AS1O95177 125 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 INSP01308 110 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 MGPP08493 103 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 GATA1P15976 413 aaPredicted RBP10.44□□□□□ -0.74
LIG3-205ENST00000585941 KIF25-AS1Q9Y6Z4 181 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 IGLV2-18A0A075B6J9 118 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 TRAV26-2A0A0B4J265 109 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 FCER1GP30273 86 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 FXYD7P58549 80 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 NUTF2P61970 127 aaKnown RBP10.44□□□□□ -0.74
LIG3-205ENST00000585941 ZNF124Q15973 351 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 LINC00173Q6ZV60 143 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 MDFICQ9P1T7 246 aa10.44□□□□□ -0.74
LIG3-205ENST00000585941 FLNBO75369 2602 aaKnown RBP10.43□□□□□ -0.74
LIG3-205ENST00000585941 SPRY2O43597 315 aa10.43□□□□□ -0.74
LIG3-205ENST00000585941 DEFA6Q01524 100 aa10.43□□□□□ -0.74
LIG3-205ENST00000585941 PIK3CD-AS1Q5SR53 167 aa10.43□□□□□ -0.74
LIG3-205ENST00000585941 SMIM2Q9BVW6 85 aa10.43□□□□□ -0.74
LIG3-205ENST00000585941 PAM16Q9Y3D7 125 aa10.43□□□□□ -0.74
LIG3-205ENST00000585941 HIVEP1P15822 2718 aa10.42□□□□□ -0.74
LIG3-205ENST00000585941 TRAV9-2A0A087WT02 112 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms