RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 STAB2Q8WWQ8 2551 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 TRAV25A0A0B4J276 109 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 A0A1B0GW15 77 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 K7EQG2 157 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 SPINK4O60575 86 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 HLA-DQA1P01909 254 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 ORM1P02763 201 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 ZNF688P0C7X2 276 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 PRB4P10163 310 aaPredicted RBP7.56□□□□□ -1.2
SS18-221ENST00000582448 ACTL10Q5JWF8 245 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 MRPL54Q6P161 138 aaKnown RBP7.56□□□□□ -1.2
SS18-221ENST00000582448 LINC00322Q6ZN03 302 aaPredicted RBP7.56□□□□□ -1.2
SS18-221ENST00000582448 NUP35Q8NFH5 326 aa7.56□□□□□ -1.2
SS18-221ENST00000582448 CSMD3Q7Z407 3707 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 SNURFLB1AK76 121 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 GPX1P07203 203 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 CSN3P07498 182 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 EDN2P20800 178 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 TSPOP30536 169 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 LEPP41159 167 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 HBBP68871 147 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 FABP9Q0Z7S8 132 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 RIGQ13278 110 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 PGLYRP4Q96LB8 373 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 TPPP3Q9BW30 176 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 HYDINQ4G0P3 5121 aa7.55□□□□□ -1.2
SS18-221ENST00000582448 TMSB15BA0A087X1C1 80 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 TRAV21A0A0B4J279 112 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 A0A1B0GUT8 65 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 TRGC1P0CF51 173 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 CRIP1P50238 77 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 FOXA3P55318 350 aaPredicted RBP7.54□□□□□ -1.2
SS18-221ENST00000582448 CMC4P56277 68 aaPredicted RBP7.54□□□□□ -1.2
SS18-221ENST00000582448 NDUFA6P56556 154 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 FOXI2Q6ZQN5 318 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 SPAG8Q99932 426 aaPredicted RBP7.54□□□□□ -1.2
SS18-221ENST00000582448 SIGLEC8Q9NYZ4 499 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 SELENOKQ9Y6D0 94 aa7.54□□□□□ -1.2
SS18-221ENST00000582448 TRIAP1O43715 76 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BKO60814 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 APCSP02743 223 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BJP06899 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 ZNF705DP0CH99 300 aaPredicted RBP7.53□□□□□ -1.2
SS18-221ENST00000582448 ZNF705BP0CI00 300 aaPredicted RBP7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BOP23527 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BBP33778 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 CAMPP49913 170 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BDP58876 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BCP62807 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST2H2BEQ16778 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 DEFB114Q30KQ6 69 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BHQ93079 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 ODF3Q96PU9 254 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BNQ99877 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 HIST1H2BMQ99879 126 aa7.53□□□□□ -1.2
SS18-221ENST00000582448 A0A0J9YX75 114 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 F2Z2F3 143 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 F6UB75 175 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 GZMBP10144 247 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 RNASE4P34096 147 aaKnown RBP7.52□□□□□ -1.21
SS18-221ENST00000582448 ZNF80P51504 273 aaPredicted RBP7.52□□□□□ -1.21
SS18-221ENST00000582448 SNRPEP62304 92 aaKnown RBP7.52□□□□□ -1.21
SS18-221ENST00000582448 TMEM136Q6ZRR5 245 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 TMEM61Q8N0U2 210 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 FER1L6-AS1Q8NA97 138 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 OR2K2Q8NGT1 345 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 GTSF1Q8WW33 167 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 FAM110AQ9BQ89 295 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 RETNQ9HD89 108 aa7.52□□□□□ -1.21
SS18-221ENST00000582448 LOC105371267A0A1B0GV96 52 aa7.51□□□□□ -1.21
SS18-221ENST00000582448 J3KRW8 73 aa7.51□□□□□ -1.21
SS18-221ENST00000582448 CRISP2P16562 243 aa7.51□□□□□ -1.21
SS18-221ENST00000582448 S100A2P29034 98 aa7.51□□□□□ -1.21
SS18-221ENST00000582448 SMIM15Q7Z3B0 74 aa7.51□□□□□ -1.21
SS18-221ENST00000582448 A0A1B0GXF2 115 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 RBMY1BA6NDE4 496 aaKnown RBP7.5□□□□□ -1.21
SS18-221ENST00000582448 RBMY1EA6NEQ0 496 aaKnown RBP7.5□□□□□ -1.21
SS18-221ENST00000582448 C5orf52A6NGY3 159 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 RBMY1DP0C7P1 496 aaKnown RBP7.5□□□□□ -1.21
SS18-221ENST00000582448 S100A4P26447 101 aaKnown RBP7.5□□□□□ -1.21
SS18-221ENST00000582448 DEFB131AP59861 70 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 LYZL1Q6UWQ5 148 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 FAM159AQ6UWV7 190 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 ZFAND2AQ8N6M9 145 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 KCNS1Q96KK3 526 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 FAM19A4Q96LR4 140 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 NAGKQ9UJ70 344 aa7.5□□□□□ -1.21
SS18-221ENST00000582448 GRIFINA4D1Z8 144 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 A8MZ25 164 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 PHOX2AO14813 284 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 LY6G6CO95867 125 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 IGKV3-20P01619 116 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 IGLV1-51P01701 117 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 ARMS2P0C7Q2 107 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 CTRLP40313 264 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 ASIPP42127 132 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 CDKN1BP46527 198 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 AKR1D1P51857 326 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 DEFB1P60022 68 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms