RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 OR5AL1P0C617 328 aa12.88□□□□□ -0.35
CCDC40-213ENST00000574933 IGLC6P0CF74 106 aa12.88□□□□□ -0.35
CCDC40-213ENST00000574933 DEFB130BP0DP73 79 aa12.88□□□□□ -0.35
CCDC40-213ENST00000574933 DEFB130AP0DP74 79 aa12.88□□□□□ -0.35
CCDC40-213ENST00000574933 MRPL16Q9NX20 251 aaKnown RBP12.88□□□□□ -0.35
CCDC40-213ENST00000574933 GAGE12BA1L429 117 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 GATCO43716 136 aaKnown RBP12.87□□□□□ -0.35
CCDC40-213ENST00000574933 GAGE7O76087 117 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 GAGE12FP0CL80 117 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 GAGE12GP0CL81 117 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 GAGE12IP0CL82 117 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 ADCYAP1P18509 176 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 ERVFC1-1P60608 527 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 PNRC1Q12796 327 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-213ENST00000574933 ADIRFQ15847 76 aa12.87□□□□□ -0.35
CCDC40-213ENST00000574933 TRAV10A0A0B4J240 114 aa12.86□□□□□ -0.35
CCDC40-213ENST00000574933 PHLDA1Q8WV24 401 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-213ENST00000574933 SFRP2Q96HF1 295 aa12.86□□□□□ -0.35
CCDC40-213ENST00000574933 SEC11CQ9BY50 192 aa12.86□□□□□ -0.35
CCDC40-213ENST00000574933 C3orf84H3BNL1 204 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 NXPH4O95158 308 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 ATP5G1P05496 136 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 ZNF876PQ49A33 203 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 C10orf91Q5T1B1 145 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 C15orf54Q8N8G6 183 aa12.85□□□□□ -0.35
CCDC40-213ENST00000574933 A0A1W2PPQ1 181 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 A8MWL6 223 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 GZMBP10144 247 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 FER1L6-AS1Q8NA97 138 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 PHLDA3Q9Y5J5 127 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 V9GYV3 84 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 CSMD3Q7Z407 3707 aa12.84□□□□□ -0.35
CCDC40-213ENST00000574933 TRGV2A0A075B6R0 118 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 DEFB131BA0A096LNP1 70 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 TRAV4A0A0B4J268 109 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 FAM231BA6NCW3 169 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 NUPR2A6NF83 97 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 F2Z2F3 143 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 F8W036 122 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 FOXA3P55318 350 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-213ENST00000574933 CEMP1Q6PRD7 247 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-213ENST00000574933 POM121L12Q8N7R1 296 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 OR10G8Q8NGN5 311 aa12.83□□□□□ -0.36
CCDC40-213ENST00000574933 RS1O15537 224 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 CTRLP40313 264 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 DMRTA1Q5VZB9 504 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 WDR73Q6P4I2 378 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 ZFP82Q8N141 532 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 SYT8Q8NBV8 401 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 OR10AG1Q8NH19 301 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 TSKUQ8WUA8 353 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 CNFNQ9BYD5 112 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 GFRA4Q9GZZ7 299 aa12.82□□□□□ -0.36
CCDC40-213ENST00000574933 CARHSP1Q9Y2V2 147 aaKnown RBP12.82□□□□□ -0.36
CCDC40-213ENST00000574933 IGHV4-4A0A075B6R2 117 aa12.81□□□□□ -0.36
CCDC40-213ENST00000574933 CIDEAO60543 219 aa12.81□□□□□ -0.36
CCDC40-213ENST00000574933 GTSF1Q8WW33 167 aa12.81□□□□□ -0.36
CCDC40-213ENST00000574933 FAM210BQ96KR6 192 aa12.81□□□□□ -0.36
CCDC40-213ENST00000574933 TENM2Q9NT68 2774 aa12.81□□□□□ -0.36
CCDC40-213ENST00000574933 A8MWV9 139 aa12.8□□□□□ -0.36
CCDC40-213ENST00000574933 CACNG7P62955 275 aa12.8□□□□□ -0.36
CCDC40-213ENST00000574933 CFAP126Q5VTH2 177 aa12.8□□□□□ -0.36
CCDC40-213ENST00000574933 PPP1R2P9O14990 202 aa12.79□□□□□ -0.36
CCDC40-213ENST00000574933 LYZL1Q6UWQ5 148 aa12.79□□□□□ -0.36
CCDC40-213ENST00000574933 OR4C5Q8NGB2 326 aa12.79□□□□□ -0.36
CCDC40-213ENST00000574933 M0R381 172 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 HOXA5P20719 270 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 FHL2Q14192 279 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 NDUFA5Q16718 116 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 CASC10Q5T4H9 136 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 ZFAND6Q6FIF0 208 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 UFSP1Q6NVU6 142 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 ZFP2Q6ZN57 461 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 ZNF479Q96JC4 524 aa12.78□□□□□ -0.36
CCDC40-213ENST00000574933 KLK5Q9Y337 293 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-213ENST00000574933 F5H768 121 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 MT-ND4LP03901 98 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 HTN3P15516 51 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 SLAQ13239 276 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 RNF212Q495C1 297 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 SPANXN1Q5VSR9 72 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 ANAPC16Q96DE5 110 aa12.77□□□□□ -0.37
CCDC40-213ENST00000574933 SMIM27A0A1W2PRY6 76 aa12.76□□□□□ -0.37
CCDC40-213ENST00000574933 IGHV3-53P01767 116 aa12.76□□□□□ -0.37
CCDC40-213ENST00000574933 TCTAP57738 103 aa12.76□□□□□ -0.37
CCDC40-213ENST00000574933 TPPP3Q9BW30 176 aa12.76□□□□□ -0.37
CCDC40-213ENST00000574933 JPT2Q9H910 190 aa12.76□□□□□ -0.37
CCDC40-213ENST00000574933 MUC21A0A0G2JKD1 596 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 MUC21A0A140T8X8 626 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 HIGD1CA8MV81 97 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 H3BNG1 76 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 RHODO00212 210 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 CRYGDP07320 174 aa12.75□□□□□ -0.37
CCDC40-213ENST00000574933 DYNC2H1Q8NCM8 4307 aaKnown RBP12.74□□□□□ -0.37
CCDC40-213ENST00000574933 GATA1P15976 413 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-213ENST00000574933 NTF3P20783 257 aa12.74□□□□□ -0.37
CCDC40-213ENST00000574933 PGLYRP4Q96LB8 373 aa12.74□□□□□ -0.37
CCDC40-213ENST00000574933 SAMD10Q9BYL1 202 aa12.74□□□□□ -0.37
CCDC40-213ENST00000574933 NAT8BQ9UHF3 227 aa12.74□□□□□ -0.37
CCDC40-213ENST00000574933 PRO0255Q9UI72 69 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms