RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 CRIP2P52943 208 aaPredicted RBP11.81□□□□□ -0.52
NUP88-207ENST00000573584 LGALS1P09382 135 aaKnown RBP11.81□□□□□ -0.52
NUP88-207ENST00000573584 SCGB2A2Q13296 93 aa11.81□□□□□ -0.52
NUP88-207ENST00000573584 PRADC1Q9BSG0 188 aa11.81□□□□□ -0.52
NUP88-207ENST00000573584 FAM19A4Q96LR4 140 aa11.8□□□□□ -0.52
NUP88-207ENST00000573584 SPANXB1Q9NS25 103 aaPredicted RBP11.8□□□□□ -0.52
NUP88-207ENST00000573584 A0A1B0GWB2 263 aa11.8□□□□□ -0.52
NUP88-207ENST00000573584 MED14OSP0DP75 135 aa11.8□□□□□ -0.52
NUP88-207ENST00000573584 RNASE3P12724 160 aaKnown RBP11.8□□□□□ -0.52
NUP88-207ENST00000573584 PPP1R17O96001 155 aa11.8□□□□□ -0.52
NUP88-207ENST00000573584 IGHV1-69DA0A0B4J2H0 117 aa11.79□□□□□ -0.52
NUP88-207ENST00000573584 HOXA3O43365 443 aaPredicted RBP11.79□□□□□ -0.52
NUP88-207ENST00000573584 IGHV1-69P01742 117 aa11.79□□□□□ -0.52
NUP88-207ENST00000573584 ETDBQ3ZM63 59 aa11.79□□□□□ -0.52
NUP88-207ENST00000573584 GAGE13Q4V321 117 aa11.79□□□□□ -0.52
NUP88-207ENST00000573584 SH2D6Q7Z4S9 175 aa11.79□□□□□ -0.52
NUP88-207ENST00000573584 ZNF815PA8K554 130 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 LY6EQ16553 131 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 USMG5Q96IX5 58 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 SCGB1D4Q6XE38 83 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 LCNL1Q6ZST4 164 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 APRG1Q8IVJ8 170 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 MTURNQ8N3F0 131 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 RHPN1-AS1Q9BWJ2 59 aa11.78□□□□□ -0.52
NUP88-207ENST00000573584 J3QR89 54 aa11.77□□□□□ -0.52
NUP88-207ENST00000573584 DUSP14O95147 198 aaKnown RBP11.77□□□□□ -0.52
NUP88-207ENST00000573584 VPS13CQ709C8 3753 aa11.77□□□□□ -0.52
NUP88-207ENST00000573584 PF4V1P10720 104 aa11.77□□□□□ -0.53
NUP88-207ENST00000573584 MORN3Q6PF18 240 aaPredicted RBP11.76□□□□□ -0.53
NUP88-207ENST00000573584 HIVEP3Q5T1R4 2406 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 SRD5A1P18405 259 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 CD300EQ496F6 205 aaPredicted RBP11.76□□□□□ -0.53
NUP88-207ENST00000573584 SAMD13Q5VXD3 122 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 DEFB104AQ8WTQ1 72 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 PGPEP1Q9NXJ5 209 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 TSSC4Q9Y5U2 329 aaPredicted RBP11.76□□□□□ -0.53
NUP88-207ENST00000573584 TRBV7-9A0A0J9YWB2 115 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 CRYGDP07320 174 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 SRSF9Q13242 221 aaKnown RBP eCLIP11.76□□□□□ -0.53
NUP88-207ENST00000573584 POM121L12Q8N7R1 296 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 KLHL30-AS1Q8NEE0 82 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 GTSF1LQ9H1H1 148 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 KIF25-AS1Q9Y6Z4 181 aa11.76□□□□□ -0.53
NUP88-207ENST00000573584 LINC00315P59091 139 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 PLEKHB2Q96CS7 222 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 IGHV4-39P01824 125 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 IGHG2P01859 326 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 COX6B1P14854 86 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 SIGMAR1Q99720 223 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 MRPL16Q9NX20 251 aaKnown RBP11.75□□□□□ -0.53
NUP88-207ENST00000573584 PRO0461Q9UI25 63 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 TP53TG1Q9Y2A0 90 aa11.75□□□□□ -0.53
NUP88-207ENST00000573584 TMEM238LA0A1B0GVL6 79 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 GAGE12HA6NDE8 117 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 A6NJY4 79 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 H3BUA1 57 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 NXPH4O95158 308 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 TSHBP01222 138 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 AZU1P20160 251 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 EMP1P54849 157 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 FAM159AQ6UWV7 190 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 JPT2Q9H910 190 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 SPTAN1Q13813 2472 aaKnown RBP11.74□□□□□ -0.53
NUP88-207ENST00000573584 IGHV4OR15-8A0A075B7B6 117 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 A0A087WW49 117 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 BLCAPP62952 87 aa11.74□□□□□ -0.53
NUP88-207ENST00000573584 SPAG8Q99932 426 aaPredicted RBP11.74□□□□□ -0.53
NUP88-207ENST00000573584 C11orf86A6NJI1 115 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 WFDC12Q8WWY7 111 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 DAZ1Q9NQZ3 744 aaKnown RBP11.73□□□□□ -0.53
NUP88-207ENST00000573584 H3BUX3 64 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 BRI3O95415 125 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 IGHV4-38-2P0DP08 117 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 ZFP2Q6ZN57 461 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 COL12A1Q99715 3063 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 A0A087WWL8 130 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 IGIPA6NJ69 53 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 KLLNB2CW77 178 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 F5H697 171 aa11.73□□□□□ -0.53
NUP88-207ENST00000573584 IGLV4-69A0A075B6H9 119 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 C19orf84I3L1E1 186 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 POLR2KP53803 58 aaKnown RBP11.72□□□□□ -0.53
NUP88-207ENST00000573584 SUMO4Q6EEV6 95 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 Q6ZS46 218 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 KIR2DL4Q99706 377 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 MUC4Q99102 2169 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 VCYO14598 125 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 RPL39P62891 51 aaKnown RBP11.72□□□□□ -0.53
NUP88-207ENST00000573584 RPL32P62910 135 aaKnown RBP11.72□□□□□ -0.53
NUP88-207ENST00000573584 SMAGPQ0VAQ4 97 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 PMVKQ15126 192 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 PAPPA-AS1Q5QFB9 102 aa11.72□□□□□ -0.53
NUP88-207ENST00000573584 IGHV4-61A0A0C4DH41 118 aa11.71□□□□□ -0.53
NUP88-207ENST00000573584 HERVK_113P61574 105 aa11.71□□□□□ -0.53
NUP88-207ENST00000573584 CD7P09564 240 aa11.71□□□□□ -0.54
NUP88-207ENST00000573584 EDN2P20800 178 aa11.71□□□□□ -0.54
NUP88-207ENST00000573584 UBE2D1P51668 147 aa11.71□□□□□ -0.54
NUP88-207ENST00000573584 INSL3P51460 131 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 LY6DQ14210 128 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms