RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PLGLAQ15195 96 aa8.4□□□□□ -1.07
CLK3-226ENST00000569406 FAM104BQ5XKR9 115 aa8.4□□□□□ -1.07
CLK3-226ENST00000569406 Q71RC1 249 aaPredicted RBP8.4□□□□□ -1.07
CLK3-226ENST00000569406 C9orf85Q96MD7 179 aa8.4□□□□□ -1.07
CLK3-226ENST00000569406 IGHV3-72A0A0B4J1Y9 119 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 ZNF134P52741 427 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 ERHP84090 104 aaKnown RBP8.39□□□□□ -1.07
CLK3-226ENST00000569406 MUC6Q6W4X9 2439 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 MALRD1Q5VYJ5 2156 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.39□□□□□ -1.076e-7■■■□□ 16.8
CLK3-226ENST00000569406 LHBP01229 141 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 HLA-DMBP28068 263 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 LINC00311Q8N616 119 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 ZNRD1Q9P1U0 126 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 CEP295Q9C0D2 2601 aa8.39□□□□□ -1.07
CLK3-226ENST00000569406 NBR2O15453 112 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 CGB3P0DN86 165 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 CGB7P0DN87 165 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 LOXL3P58215 753 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 PRB3Q04118 309 aaPredicted RBP8.38□□□□□ -1.07
CLK3-226ENST00000569406 CDSNQ15517 529 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 IMUPQ9GZP8 106 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 DUTP33316 252 aaKnown RBP8.38□□□□□ -1.07
CLK3-226ENST00000569406 C10orf113Q5VZT2 155 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 HCP5Q6MZN7 132 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 KLHL30-AS1Q8NEE0 82 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 ZNF785A8K8V0 405 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 CCL13Q99616 98 aa8.38□□□□□ -1.07
CLK3-226ENST00000569406 TRBV10-2A0A0K0K1G8 114 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 SRRM5B3KS81 715 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 PAX8Q06710 450 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 PRSS33Q8NF86 280 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 AGPAT4-IT1Q9H0P7 198 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 PRORYQ9H606 182 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 ELANEP08246 267 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 CIRBPQ14011 172 aaKnown RBP8.37□□□□□ -1.07
CLK3-226ENST00000569406 FMC1Q96HJ9 113 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 LYZL1Q6UWQ5 148 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 LINC01561Q8N1V8 128 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 SHANK2-AS3Q9BTD1 123 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 DPH3P1Q9H4G8 78 aa8.37□□□□□ -1.07
CLK3-226ENST00000569406 ATP5G1P05496 136 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 CCL8P80075 99 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 KLK15Q9H2R5 256 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 SPG11Q96JI7 2443 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 IGLV3-9A0A075B6K5 115 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 PLNP26678 52 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 C16orf92Q96LL3 132 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 LINC01619G3V211 115 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 ATOX1O00244 68 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 FXYD5Q96DB9 178 aa8.36□□□□□ -1.07
CLK3-226ENST00000569406 C10orf55Q5SWW7 151 aa8.35□□□□□ -1.07
CLK3-226ENST00000569406 METTL26Q96S19 204 aa8.35□□□□□ -1.07
CLK3-226ENST00000569406 SPRY2O43597 315 aa8.35□□□□□ -1.07
CLK3-226ENST00000569406 TCRAP04437 139 aa8.35□□□□□ -1.07
CLK3-226ENST00000569406 ZCCHC24Q8N2G6 241 aaKnown RBP8.35□□□□□ -1.07
CLK3-226ENST00000569406 GAS8-AS1O95177 125 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 SAA2P0DJI9 122 aaPredicted RBP8.34□□□□□ -1.07
CLK3-226ENST00000569406 C17orf58Q2M2W7 97 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 Q8N8P6 123 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 CCL17Q92583 94 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 DLL1O00548 723 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 LYZP61626 148 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 LINC00305Q7Z4B0 112 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 FAM216BQ8N7L0 139 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 C17orf77Q96MU5 243 aa8.34□□□□□ -1.07
CLK3-226ENST00000569406 FAM240AA0A1B0GVK7 77 aa8.33□□□□□ -1.08
CLK3-226ENST00000569406 CTSZQ9UBR2 303 aa8.33□□□□□ -1.08
CLK3-226ENST00000569406 Q86TA4 180 aa8.33□□□□□ -1.08
CLK3-226ENST00000569406 K7ENP7 123 aa8.33□□□□□ -1.08
CLK3-226ENST00000569406 GATA1P15976 413 aaPredicted RBP8.33□□□□□ -1.08
CLK3-226ENST00000569406 LINC00482Q8N8I6 264 aa8.33□□□□□ -1.08
CLK3-226ENST00000569406 TMEM178BH3BS89 294 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 IGKV1-16P04430 117 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 NPC2P61916 151 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 RHOHQ15669 191 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 LINC00643Q86TS7 51 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 SPANXDQ9BXN6 97 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 Q9H3A6 140 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 U3KQK5 164 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 SUB1P53999 127 aaKnown RBP eCLIP8.32□□□□□ -1.08
CLK3-226ENST00000569406 Q8NA96 180 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 F8VRH5 84 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 C6orf226Q5I0X4 101 aa8.32□□□□□ -1.08
CLK3-226ENST00000569406 ITPR1Q14643 2758 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 C15orf61A6NNL5 157 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 SYNJ2BPP57105 145 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 SMCR5Q8TEV8 140 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 PEMTQ9UBM1 199 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 CELSR1Q9NYQ6 3014 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 TLN1Q9Y490 2541 aaKnown RBP8.31□□□□□ -1.08
CLK3-226ENST00000569406 CCL21O00585 134 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 Q6ZS46 218 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 S4R3C0 116 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 DOPEY2Q9Y3R5 2298 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 H7C423 109 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 IGHV3-33P01772 117 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 NEXN-AS1Q8NBZ9 246 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 C20orf173Q96LM9 149 aa8.31□□□□□ -1.08
CLK3-226ENST00000569406 LINC00574Q9H8X3 128 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms