RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 VMA21Q3ZAQ7 101 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 PSMG4Q5JS54 123 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 STHQ8IWL8 128 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 NHLRC2Q8NBF2 726 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 CSNK1G2-AS1Q8NCQ2 148 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 TMEM70Q9BUB7 260 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 ZNF430Q9H8G1 570 aaPredicted RBP7.88□□□□□ -1.15
CDH3-208ENST00000569036 SEPSECSQ9HD40 501 aaKnown RBP7.88□□□□□ -1.15
CDH3-208ENST00000569036 ZNF492Q9P255 531 aa7.88□□□□□ -1.15
CDH3-208ENST00000569036 IGHV3OR16-8A0A075B7F1 116 aa7.87□□□□□ -1.15
CDH3-208ENST00000569036 ZNF207O43670 478 aaKnown RBP7.87□□□□□ -1.15
CDH3-208ENST00000569036 SPART-AS1P0CW21 52 aa7.87□□□□□ -1.15
CDH3-208ENST00000569036 CRYBB3P26998 211 aa7.87□□□□□ -1.15
CDH3-208ENST00000569036 DEFB131AP59861 70 aa7.87□□□□□ -1.15
CDH3-208ENST00000569036 MRPL54Q6P161 138 aaKnown RBP7.87□□□□□ -1.15
CDH3-208ENST00000569036 TRPT1Q86TN4 253 aaKnown RBP7.87□□□□□ -1.15
CDH3-208ENST00000569036 ALKBH7Q9BT30 221 aaPredicted RBP7.87□□□□□ -1.15
CDH3-208ENST00000569036 TMEM191AQ9H0A3 160 aa7.87□□□□□ -1.15
CDH3-208ENST00000569036 A0A1B0GW15 77 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 A0A1B0GXF2 115 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 GGTLC3B5MD39 225 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 HSBP1L1C9JCN9 74 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 M0R2Z0 102 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 ACTL6BO94805 426 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 KLK9Q2XQG4 91 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 MIR17HGQ75NE6 70 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 OR4C5Q8NGB2 326 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 ZNF502Q8TBZ5 544 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 DEFB104AQ8WTQ1 72 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 KLK9Q9UKQ9 250 aa7.86□□□□□ -1.15
CDH3-208ENST00000569036 TRBV6-1A0A0K0K1D8 114 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 F2Z2F3 143 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 UPK2O00526 184 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 CCL25O15444 150 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 OR7C2O60412 319 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 DEFA4P12838 97 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 HBBP68871 147 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 OSR1Q8TAX0 266 aaPredicted RBP7.85□□□□□ -1.15
CDH3-208ENST00000569036 SRSF8Q9BRL6 282 aaKnown RBP7.85□□□□□ -1.15
CDH3-208ENST00000569036 SMPXQ9UHP9 88 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 KLF12Q9Y4X4 402 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 OR51B2Q9Y5P1 312 aa7.85□□□□□ -1.15
CDH3-208ENST00000569036 IGLV11-55A0A075B6I3 123 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 A8MWL6 223 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 K7EMT4 169 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 K7ERU9 68 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 PEX7O00628 323 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 CHEK1O14757 476 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 CRYGCP07315 174 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 SUB1P53999 127 aaKnown RBP eCLIP7.84□□□□□ -1.15
CDH3-208ENST00000569036 EMP1P54849 157 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 UBE2L3P68036 154 aaKnown RBP7.84□□□□□ -1.15
CDH3-208ENST00000569036 HIST1H1AQ02539 215 aaPredicted RBP7.84□□□□□ -1.15
CDH3-208ENST00000569036 SPINK9Q5DT21 86 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 SPATA31B1PQ5VZV4 182 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 THAP8Q8NA92 274 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 GATD1Q8NB37 220 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 VSTM2AQ8TAG5 236 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 RNASE7Q9H1E1 156 aaKnown RBP7.84□□□□□ -1.15
CDH3-208ENST00000569036 HSPB8Q9UJY1 196 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 LINC00588Q9Y4M8 146 aa7.84□□□□□ -1.15
CDH3-208ENST00000569036 E7EUB6 86 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 NDUFA4O00483 81 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 SAA1P0DJI8 122 aaPredicted RBP7.83□□□□□ -1.16
CDH3-208ENST00000569036 MGST1P10620 155 aaKnown RBP7.83□□□□□ -1.16
CDH3-208ENST00000569036 SEC11AP67812 179 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 ERHP84090 104 aaKnown RBP7.83□□□□□ -1.16
CDH3-208ENST00000569036 SLAQ13239 276 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 TTC32Q5I0X7 151 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 ETFRF1Q6IPR1 90 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 NUP35Q8NFH5 326 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 FMC1Q96HJ9 113 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 FAM167A-AS1Q96KT0 104 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 NDFIP1Q9BT67 221 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 RHPN1-AS1Q9BWJ2 59 aa7.83□□□□□ -1.16
CDH3-208ENST00000569036 IGHV3-49A0A0A0MS15 119 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 OR2T8A6NH00 312 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 OXTP01178 125 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 RNASE2P10153 161 aaKnown RBP7.82□□□□□ -1.16
CDH3-208ENST00000569036 PRB4P10163 310 aaPredicted RBP7.82□□□□□ -1.16
CDH3-208ENST00000569036 NTF3P20783 257 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 Q6AWC8 147 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 GPR82Q96P67 336 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 SLC25A2Q9BXI2 301 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 Q9H3A6 140 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 RPP21Q9H633 154 aaKnown RBP7.82□□□□□ -1.16
CDH3-208ENST00000569036 DKK2Q9UBU2 259 aa7.82□□□□□ -1.16
CDH3-208ENST00000569036 IGHV7-4-1A0A0J9YVY3 117 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 SYS1-DBNDD2H3BUS1 97 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 COX7A2P2O60397 106 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 PLA2G1BP04054 148 aaKnown RBP7.81□□□□□ -1.16
CDH3-208ENST00000569036 RPL27AP46776 148 aaKnown RBP7.81□□□□□ -1.16
CDH3-208ENST00000569036 HINT1P49773 126 aaPredicted RBP7.81□□□□□ -1.16
CDH3-208ENST00000569036 CCL18P55774 89 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 FAM222AQ5U5X8 452 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 C10orf113Q5VZT2 155 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 EBLN2Q6P2I7 272 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 TCF24Q7RTU0 167 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 TMEM116Q8NCL8 245 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms