RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 BEX4Q9NWD9 120 aaPredicted RBP11.08□□□□□ -0.64
VPS35-210ENST00000568784 TRAV8-2A0A0B4J237 113 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 CD7P09564 240 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 FAM159AQ6UWV7 190 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 NRACQ8N912 160 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 IGHV7-4-1A0A0J9YVY3 117 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 DUSP14O95147 198 aaKnown RBP11.07□□□□□ -0.64
VPS35-210ENST00000568784 HERVK_113P61574 105 aa11.07□□□□□ -0.64
VPS35-210ENST00000568784 ZNF56Q15929 161 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 RRN3P1Q2M238 152 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 PSMG4Q5JS54 123 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 TMEM190Q8WZ59 177 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 PTH2Q96A98 100 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 CENPEQ02224 2701 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 TMEM238LA0A1B0GVL6 79 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 A6NJY4 79 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 NDUFS8O00217 210 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 TCF15Q12870 199 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 C20orf173Q96LM9 149 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 TP53TG1Q9Y2A0 90 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 TRAV12-3A0A0B4J271 114 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 NPFFO15130 113 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 ZNF48Q96MX3 618 aaPredicted RBP11.06□□□□□ -0.64
VPS35-210ENST00000568784 SPAG8Q99932 426 aaPredicted RBP11.06□□□□□ -0.64
VPS35-210ENST00000568784 OOSP1A8MZH6 123 aa11.06□□□□□ -0.64
VPS35-210ENST00000568784 RPL39P62891 51 aaKnown RBP11.06□□□□□ -0.64
VPS35-210ENST00000568784 CLPSL1A2RUU4 121 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 C9orf139Q6ZV77 190 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 KIR2DL4Q99706 377 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 TRBV7-1A0A0A6YYK4 115 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 F8W1H4 67 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 K7ENP7 123 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 UBE2E1P51965 193 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 PLEKHB2Q96CS7 222 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 TM2D2Q9BX73 214 aa11.05□□□□□ -0.64
VPS35-210ENST00000568784 SONP18583 2426 aaKnown RBP11.04□□□□□ -0.64
VPS35-210ENST00000568784 E9PLD3 99 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 RAX2Q96IS3 184 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 CIDEAO60543 219 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 RASL10AQ92737 203 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 C20orf78Q9BR46 151 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 CENPVL3A0A0U1RRI6 287 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 ADORA2A-AS1P86434 159 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 MRAP2Q96G30 205 aa11.04□□□□□ -0.64
VPS35-210ENST00000568784 LY6DQ14210 128 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 LINC00477Q96M19 166 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 RHPN1-AS1Q9BWJ2 59 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 CNFNQ9BYD5 112 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 PRSS2P07478 247 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 LGALS1P09382 135 aaKnown RBP11.03□□□□□ -0.64
VPS35-210ENST00000568784 ZNF688P0C7X2 276 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 SYT8Q8NBV8 401 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 SPANXB1Q9NS25 103 aaPredicted RBP11.03□□□□□ -0.64
VPS35-210ENST00000568784 TRAV12-2A0A075B6T6 113 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 RBAKDNA6NC62 111 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 BAALCQ8WXS3 180 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 MYO18BQ8IUG5 2567 aa11.03□□□□□ -0.64
VPS35-210ENST00000568784 IGLV2-18A0A075B6J9 118 aa11.02□□□□□ -0.64
VPS35-210ENST00000568784 ZFP2Q6ZN57 461 aa11.02□□□□□ -0.64
VPS35-210ENST00000568784 Q8N6K4 173 aa11.02□□□□□ -0.64
VPS35-210ENST00000568784 ZMAT4Q9H898 229 aa11.02□□□□□ -0.64
VPS35-210ENST00000568784 LGALS3P17931 250 aaKnown RBP11.02□□□□□ -0.65
VPS35-210ENST00000568784 CLEC2AQ6UVW9 174 aa11.02□□□□□ -0.65
VPS35-210ENST00000568784 TRAV2A0A0B4J234 112 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 H3BUX3 64 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 ZNF575Q86XF7 245 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 DLX4Q92988 240 aaPredicted RBP11.01□□□□□ -0.65
VPS35-210ENST00000568784 SIRPDQ9H106 197 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 IGHV3-73A0A0B4J1V6 119 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 A0A1W2PPR1 153 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 C9orf47Q6ZRZ4 202 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 MOB4Q9Y3A3 225 aa11.01□□□□□ -0.65
VPS35-210ENST00000568784 A0A1B0GV72 72 aa11□□□□□ -0.65
VPS35-210ENST00000568784 C11orf86A6NJI1 115 aa11□□□□□ -0.65
VPS35-210ENST00000568784 PHLDA1Q8WV24 401 aaPredicted RBP11□□□□□ -0.65
VPS35-210ENST00000568784 OPRPNQ99935 248 aaPredicted RBP11□□□□□ -0.65
VPS35-210ENST00000568784 CCDC168Q8NDH2 2452 aa11□□□□□ -0.65
VPS35-210ENST00000568784 OVOL1O14753 267 aa11□□□□□ -0.65
VPS35-210ENST00000568784 BLCAPP62952 87 aa11□□□□□ -0.65
VPS35-210ENST00000568784 CKS1BP61024 79 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 NPC2P61916 151 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 KLRB1Q12918 225 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 TMEM95Q3KNT9 176 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 COX8CQ7Z4L0 72 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 DUX5Q96PT3 197 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 KLK9Q9UKQ9 250 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 SDHAF1A6NFY7 115 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 ADARB2-AS1A8MUL3 147 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 TAL2Q16559 108 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 C5orf56Q8N8D9 126 aa10.99□□□□□ -0.65
VPS35-210ENST00000568784 ZFAND2AQ8N6M9 145 aa10.98□□□□□ -0.65
VPS35-210ENST00000568784 TOMM6Q96B49 74 aa10.98□□□□□ -0.65
VPS35-210ENST00000568784 SRSF2Q01130 221 aaKnown RBP10.98□□□□□ -0.65
VPS35-210ENST00000568784 C1orf122Q6ZSJ8 110 aa10.98□□□□□ -0.65
VPS35-210ENST00000568784 EBI3Q14213 229 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 SPINK8P0C7L1 97 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 EDN2P20800 178 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 NEXN-AS1Q8NBZ9 246 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 TRBV7-3A0A075B6L6 115 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 LYRM7Q5U5X0 104 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms