RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MBD2Q9UBB5 411 aa7.55□□□□□ -1.2
CLK3-222ENST00000568232 PRELID1Q9Y255 219 aa7.55□□□□□ -1.2
CLK3-222ENST00000568232 COX11Q9Y6N1 276 aa7.55□□□□□ -1.2
CLK3-222ENST00000568232 GGTLC3B5MD39 225 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 ZNF253O75346 499 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 METTL15P1P0C7V9 234 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 LRRC37A5PQ49AS3 106 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 TMEM78Q5T7P6 136 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 LCE4AQ5TA78 99 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 MGST2Q99735 147 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 ZNF471Q9BX82 626 aaPredicted RBP7.54□□□□□ -1.2
CLK3-222ENST00000568232 DPH3P1Q9H4G8 78 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 GSKIPQ9P0R6 139 aa7.54□□□□□ -1.2
CLK3-222ENST00000568232 IGHV3-73A0A0B4J1V6 119 aa7.53□□□□□ -1.2
CLK3-222ENST00000568232 GNRH2O43555 120 aa7.53□□□□□ -1.2
CLK3-222ENST00000568232 VWC2Q2TAL6 325 aa7.53□□□□□ -1.2
CLK3-222ENST00000568232 TOR2AQ5JU69 321 aa7.53□□□□□ -1.2
CLK3-222ENST00000568232 FAM122CQ6P4D5 195 aa7.53□□□□□ -1.2
CLK3-222ENST00000568232 TRAV8-1A0A0A6YYK1 113 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 BORCS7-ASMTA0A0B4J1R7 106 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 KRBOX1C9JBD0 128 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 M0R2P5 195 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 SSSCA1O60232 199 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 S100A10P60903 97 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 ARL16Q0P5N6 197 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 RAB32Q13637 225 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 ANKRD39Q53RE8 183 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 TMEM14EPQ6UXP3 125 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 LINC01600Q96MT4 127 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 PRADC1Q9BSG0 188 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 TIMM9Q9Y5J7 89 aa7.52□□□□□ -1.21
CLK3-222ENST00000568232 TRGV11A0A075B6L2 103 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 FBLL1A6NHQ2 334 aaKnown RBP7.51□□□□□ -1.21
CLK3-222ENST00000568232 PRSS47A8MTI9 375 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 FNDC10F2Z333 226 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 TEX46H3BTG2 121 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 PYYP10082 97 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 HIST1H1EP10412 219 aaKnown RBP7.51□□□□□ -1.21
CLK3-222ENST00000568232 RPL12P30050 165 aaKnown RBP7.51□□□□□ -1.21
CLK3-222ENST00000568232 ZNF138P52744 262 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 MIC13Q5XKP0 118 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 UQCC3Q6UW78 93 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 FAM159AQ6UWV7 190 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 COMMD7Q86VX2 200 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 RMI2Q96E14 147 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 SMIM8Q96KF7 97 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 NAGKQ9UJ70 344 aa7.51□□□□□ -1.21
CLK3-222ENST00000568232 MBPP02686 304 aaPredicted RBP7.5□□□□□ -1.21
CLK3-222ENST00000568232 RAB5CP51148 216 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 BLOC1S1P78537 153 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 BAXQ07812 192 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 ZNF266Q14584 549 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 RHOHQ15669 191 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 ALKAL2Q6UX46 152 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 C11orf1Q9H5F2 150 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 KLK12Q9UKR0 248 aa7.5□□□□□ -1.21
CLK3-222ENST00000568232 TRBV6-4A0A1B0GX49 114 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 RAB19A4D1S5 217 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 H0YIZ8 118 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 SCGB1D2O95969 90 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 OR10J4P0C629 311 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 CAMLGP49069 296 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 VAMP2P63027 116 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 Q6AWC8 147 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 DPPA3Q6W0C5 159 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 Q6ZRG5 221 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 AAMDCQ9H7C9 122 aa7.49□□□□□ -1.21
CLK3-222ENST00000568232 SEC11BP0C7V7 166 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 TAS2R30P59541 319 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 FFAR4Q5NUL3 377 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 CFAP126Q5VTH2 177 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 HSD17B11Q8NBQ5 300 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 OR1L4Q8NGR5 311 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 UBE2WQ96B02 151 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 OR5AC2Q9NZP5 309 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 TMEM14CQ9P0S9 112 aa7.48□□□□□ -1.21
CLK3-222ENST00000568232 LSM5Q9Y4Y9 91 aaKnown RBP7.48□□□□□ -1.21
CLK3-222ENST00000568232 TRBV7-9A0A0J9YWB2 115 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 GAGE12JA6NER3 117 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 KRTAP10-8P60410 259 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 GAGE1Q13065 139 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 GAGE4Q13068 117 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 GAGE5Q13069 117 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 PDE6HQ13956 83 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 GAGE13Q4V321 117 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 CYTL1Q9NRR1 136 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 Q9UF83 564 aa7.47□□□□□ -1.21
CLK3-222ENST00000568232 UMAD1C9J7I0 102 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 TYMSP04818 313 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 S100A6P06703 90 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 PRSS1P07477 247 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 CAV2P51636 162 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 RAB31Q13636 194 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 C14orf177Q52M58 125 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 SDIM1Q6ZPB5 146 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 NIT1Q86X76 327 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 STX12Q86Y82 276 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 C9orf163Q8N9P6 203 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 PFDN5Q99471 154 aa7.46□□□□□ -1.22
CLK3-222ENST00000568232 LYRM2Q9NU23 88 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms