RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 IGHV3-35A0A0C4DH35 117 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 A0A1B0GUT8 65 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 A0A1B0GUV1 79 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 A0A1B0GXF2 115 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 TMEM189A5PLL7 270 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 TSTD3H0UI37 97 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 M0R3E3 92 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 NDUFA4O00483 81 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 SERF1AO75920 110 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 FRMD6-AS1P0C7T7 363 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 GZMBP10144 247 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 SRIP30626 198 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 PKIAP61925 76 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 KLF5Q13887 457 aaPredicted RBP4.46□□□□□ -1.7
VPS39-209ENST00000568029 KIAA1644Q3SXP7 199 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 LINC00322Q6ZN03 302 aaPredicted RBP4.46□□□□□ -1.7
VPS39-209ENST00000568029 COX8CQ7Z4L0 72 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 TEX29Q8N6K0 151 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 MRPL53Q96EL3 112 aaKnown RBP4.46□□□□□ -1.7
VPS39-209ENST00000568029 ZC2HC1AQ96GY0 325 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 NOL4LQ96MY1 436 aaPredicted RBP4.46□□□□□ -1.7
VPS39-209ENST00000568029 FRAS1Q86XX4 4008 aa4.46□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3OR16-8A0A075B7F1 116 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 IGKV2-40A0A087WW87 121 aaPredicted RBP4.45□□□□□ -1.7
VPS39-209ENST00000568029 CLPSL1A2RUU4 121 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 FABP5P3A8MUU1 101 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 NUPR1O60356 82 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 IGKV2D-40P01614 121 aaPredicted RBP4.45□□□□□ -1.7
VPS39-209ENST00000568029 GPX1P07203 203 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 SLAQ13239 276 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 DEFB112Q30KQ8 113 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 FAM106AQ4KMX7 169 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 OR4X2Q8NGF9 303 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 GTSF1Q8WW33 167 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 KCNS1Q96KK3 526 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 ASCL2Q99929 193 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 ALKBH7Q9BT30 221 aaPredicted RBP4.45□□□□□ -1.7
VPS39-209ENST00000568029 CSTL1Q9H114 145 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 LINC00527Q9UJ94 153 aa4.45□□□□□ -1.7
VPS39-209ENST00000568029 A0A1B0GUS0 222 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 ZNF705FA8MVS1 300 aaPredicted RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 K7EMT4 169 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 ZNF207O43670 478 aaKnown RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 SH2D1AO60880 128 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 HSBP1O75506 76 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 ZNF705DP0CH99 300 aaPredicted RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 ZNF705BP0CI00 300 aaPredicted RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 RAB4AP20338 218 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 PMCHP20382 165 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 CRIP1P50238 77 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 ZNF138P52744 262 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 BLCAPP62952 87 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 HIST1H1AQ02539 215 aaPredicted RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 TMEM78Q5T7P6 136 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 GDF5OSQ5U4N7 250 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 SAMD13Q5VXD3 122 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 C18orf32Q8TCD1 76 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 VGLL1Q99990 258 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 PEF1Q9UBV8 284 aaKnown RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 NAGKQ9UJ70 344 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 TP53TG3Q9ULZ0 132 aa4.44□□□□□ -1.7
VPS39-209ENST00000568029 HUWE1Q7Z6Z7 4374 aaKnown RBP4.44□□□□□ -1.7
VPS39-209ENST00000568029 ARHGAP32A7KAX9 2087 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 LOC102724200A0A096LPH7 203 aaPredicted RBP4.43□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3-49A0A0A0MS15 119 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3-66A0A0C4DH42 116 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 LINC00587B1AMM8 73 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 F2Z2F3 143 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 OVOL1O14753 267 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 ZNF324O75467 553 aaPredicted RBP4.43□□□□□ -1.7
VPS39-209ENST00000568029 IGHV4-59P01825 116 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 IGHG4P01861 327 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 ORM1P02763 201 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 RPL24P83731 157 aaKnown RBP4.43□□□□□ -1.7
VPS39-209ENST00000568029 C9orf139Q6ZV77 190 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 NIT1Q86X76 327 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 GATD1Q8NB37 220 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 MRAPQ8TCY5 172 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 CHCHD1Q96BP2 118 aaKnown RBP4.43□□□□□ -1.7
VPS39-209ENST00000568029 LINC00477Q96M19 166 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 CITED1Q99966 193 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 NRN1Q9NPD7 142 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 UFC1Q9Y3C8 167 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 LENEPQ9Y5L5 61 aa4.43□□□□□ -1.7
VPS39-209ENST00000568029 ABCA13Q86UQ4 5058 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3OR16-13A0A075B7E8 117 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 TMSB15BA0A087X1C1 80 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3-74A0A0B4J1X5 117 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 IGHV7-4-1A0A0J9YVY3 117 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 PRAC2D3DTV9 90 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 M0R2Z0 102 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 IGHV3-11P01762 117 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 APOHP02749 345 aaPredicted RBP4.42□□□□□ -1.7
VPS39-209ENST00000568029 OR5AL1P0C617 328 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 ARMS2P0C7Q2 107 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 NTF3P20783 257 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 HLA-DMBP28068 263 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 ID1P41134 155 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 KRTDAPP60985 99 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms