RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 MBD3L1Q8WWY6 194 aa6.84□□□□□ -1.31
SF3B3-204ENST00000563739 ZNF479Q96JC4 524 aa6.84□□□□□ -1.31
SF3B3-204ENST00000563739 SEC11CQ9BY50 192 aa6.84□□□□□ -1.31
SF3B3-204ENST00000563739 OR51M1Q9H341 326 aa6.84□□□□□ -1.31
SF3B3-204ENST00000563739 SMDT1Q9H4I9 107 aa6.84□□□□□ -1.31
SF3B3-204ENST00000563739 CARHSP1Q9Y2V2 147 aaKnown RBP6.84□□□□□ -1.31
SF3B3-204ENST00000563739 A0A1W2PPV4 95 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 C9JQL5 133 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 K7EP13 123 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 SCO1O75880 301 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 APOC3P02656 99 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 ADCYAP1P18509 176 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 LEPP41159 167 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 CCL20P78556 96 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 MRPL23Q16540 153 aaKnown RBP6.83□□□□□ -1.32
SF3B3-204ENST00000563739 IBA57Q5T440 356 aaKnown RBP6.83□□□□□ -1.32
SF3B3-204ENST00000563739 PQLC2Q6ZP29 291 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 Q8N3U1 123 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 SFT2D1Q8WV19 159 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 HHLA3Q9XRX5 114 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 FAT4Q6V0I7 4981 aa6.83□□□□□ -1.32
SF3B3-204ENST00000563739 RBFOX3A6NFN3 312 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 IBA57-AS1B1ANH7 110 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 F8W036 122 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 HMGB3O15347 200 aaKnown RBP6.82□□□□□ -1.32
SF3B3-204ENST00000563739 SLC25A5P05141 298 aaKnown RBP6.82□□□□□ -1.32
SF3B3-204ENST00000563739 NBEAP1P0C6P0 100 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 STAG3L2P0CL84 134 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 STAG3L3P0CL85 134 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 ARL14EPLP0DKL9 152 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 CRISP2P16562 243 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 ZNF726P1Q15940 193 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 RAB24Q969Q5 203 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 MRPL53Q96EL3 112 aaKnown RBP6.82□□□□□ -1.32
SF3B3-204ENST00000563739 ACTR3CQ9C0K3 210 aaPredicted RBP6.82□□□□□ -1.32
SF3B3-204ENST00000563739 EIF5A2Q9GZV4 153 aaKnown RBP6.82□□□□□ -1.32
SF3B3-204ENST00000563739 AGPAT4-IT1Q9H0P7 198 aa6.82□□□□□ -1.32
SF3B3-204ENST00000563739 CTXND1A0A1B0GTU2 59 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 A0A1B0GV50 99 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 GYPEP15421 78 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 EVI2AP22794 236 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 LINC01556Q5JQF7 62 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 ZNF506Q5JVG8 444 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 ATRAIDQ6UW56 229 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 EXOC3-AS1Q8N2X6 119 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 SVBPQ8N300 66 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 AAMDCQ9H7C9 122 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 PRELID1Q9Y255 219 aa6.81□□□□□ -1.32
SF3B3-204ENST00000563739 TRAV9-2A0A087WT02 112 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 MAP1LC3B2A6NCE7 125 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 SRIP30626 198 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 IQCF2Q8IXL9 164 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 DAZAP1Q96EP5 407 aaKnown RBP6.8□□□□□ -1.32
SF3B3-204ENST00000563739 NKX6-2Q9C056 277 aaPredicted RBP6.8□□□□□ -1.32
SF3B3-204ENST00000563739 MAP1LC3BQ9GZQ8 125 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 Q9HAA7 133 aa6.8□□□□□ -1.32
SF3B3-204ENST00000563739 SNAPINO95295 136 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 CXorf1O96002 111 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 SRP19P09132 144 aaKnown RBP6.79□□□□□ -1.32
SF3B3-204ENST00000563739 GCHFRP30047 84 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 PPT1P50897 306 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 TIRAPP58753 221 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 RANP62826 216 aaKnown RBP6.79□□□□□ -1.32
SF3B3-204ENST00000563739 ZNF415Q09FC8 603 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 C10orf126Q8N4M7 172 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 CIRBP-AS1Q8TBR5 109 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 SUN5Q8TC36 379 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 OTORQ9NRC9 128 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 TMEM167BQ9NRX6 74 aa6.79□□□□□ -1.32
SF3B3-204ENST00000563739 IGHV1OR15-1A0A075B7D0 117 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 IGKV2-40A0A087WW87 121 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-204ENST00000563739 IGHV3-38A0A0C4DH36 116 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 LECT2O14960 151 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 IFNA1P01562 189 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 IGKV2D-40P01614 121 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-204ENST00000563739 RNASE4P34096 147 aaKnown RBP6.78□□□□□ -1.32
SF3B3-204ENST00000563739 FGF8P55075 233 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-204ENST00000563739 CHAC1Q9BUX1 264 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 GNG13Q9P2W3 67 aa6.78□□□□□ -1.32
SF3B3-204ENST00000563739 PSCAO43653 123 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 NDUFS6O75380 124 aaKnown RBP6.77□□□□□ -1.33
SF3B3-204ENST00000563739 BCL2P10415 239 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 TAGLN2P37802 199 aaKnown RBP6.77□□□□□ -1.33
SF3B3-204ENST00000563739 CSN1S1P47710 185 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 SLAQ13239 276 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 C9orf47Q6ZRZ4 202 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 CLRN3Q8NCR9 226 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 RASL10AQ92737 203 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 VAX2Q9UIW0 290 aa6.77□□□□□ -1.33
SF3B3-204ENST00000563739 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.76□□□□□ -1.33
SF3B3-204ENST00000563739 TRGV4A0A0C4DH28 118 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 PGPA6NDG6 321 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 GGTLC3B5MD39 225 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 DIRC3C9JPN6 131 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 TMEM78Q5T7P6 136 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 Q8TAT8 98 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 CMTM2Q8TAZ6 248 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 DNAJC30Q96LL9 226 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 MANBALQ9NQG1 85 aa6.76□□□□□ -1.33
SF3B3-204ENST00000563739 LPAP08519 4548 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms