RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	IGHV3-30-5	P0DP03	117 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410	ATP6V0C	P27449	155 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410	FLI1	Q01543	452 aa	Predicted RBP	13.98	□□□□□ -0.17
CHD9-208	ENST00000563410		Q8N814	137 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410	EPDR1	Q9UM22	224 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410	BOLA1	Q9Y3E2	137 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410	ALG5	Q9Y673	324 aa		13.98	□□□□□ -0.17
CHD9-208	ENST00000563410		K7EQM0	130 aa		13.97	□□□□□ -0.17
CHD9-208	ENST00000563410	SMUG1	Q53HV7	270 aa		13.97	□□□□□ -0.17
CHD9-208	ENST00000563410	PRNT	Q86SH4	94 aa		13.97	□□□□□ -0.17
CHD9-208	ENST00000563410	TMEM70	Q9BUB7	260 aa		13.97	□□□□□ -0.17
CHD9-208	ENST00000563410	GTSF1L	Q9H1H1	148 aa		13.97	□□□□□ -0.17
CHD9-208	ENST00000563410	MGST1	P10620	155 aa	Known RBP	13.96	□□□□□ -0.17
CHD9-208	ENST00000563410		Q6ZSN1	163 aa		13.96	□□□□□ -0.17
CHD9-208	ENST00000563410	CYB561D1	Q8N8Q1	229 aa		13.96	□□□□□ -0.17
CHD9-208	ENST00000563410	ATP6V0E2	Q8NHE4	81 aa		13.96	□□□□□ -0.17
CHD9-208	ENST00000563410	AQP10	Q96PS8	301 aa		13.96	□□□□□ -0.17
CHD9-208	ENST00000563410	SERF2	P84101	59 aa		13.95	□□□□□ -0.18
CHD9-208	ENST00000563410	ZFP69	Q49AA0	526 aa		13.95	□□□□□ -0.18
CHD9-208	ENST00000563410	SH3BGRL3	Q9H299	93 aa		13.95	□□□□□ -0.18
CHD9-208	ENST00000563410	TMEM167B	Q9NRX6	74 aa		13.95	□□□□□ -0.18
CHD9-208	ENST00000563410	IGKV3D-20	A0A0C4DH25	116 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	CXorf1	O96002	111 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	MB	P02144	154 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	LINC00694	P0DN24	101 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410		Q8N3U1	123 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	PARL	Q9H300	379 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	FAM30A	Q9NZY2	134 aa		13.94	□□□□□ -0.18
CHD9-208	ENST00000563410	LAGE3	Q14657	143 aa		13.93	□□□□□ -0.18
CHD9-208	ENST00000563410	LINC00479	Q96M42	142 aa		13.93	□□□□□ -0.18
CHD9-208	ENST00000563410	TNFSF18	Q9UNG2	199 aa		13.93	□□□□□ -0.18
CHD9-208	ENST00000563410	FAM229A	H3BQW9	127 aa		13.92	□□□□□ -0.18
CHD9-208	ENST00000563410	WFDC2	Q14508	124 aa		13.92	□□□□□ -0.18
CHD9-208	ENST00000563410		Q5BKY6	102 aa		13.92	□□□□□ -0.18
CHD9-208	ENST00000563410	SAPCD1	Q5SSQ6	148 aa		13.92	□□□□□ -0.18
CHD9-208	ENST00000563410	ACTR3C	Q9C0K3	210 aa	Predicted RBP	13.92	□□□□□ -0.18
CHD9-208	ENST00000563410	TRAV34	A0A0B4J273	112 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410		A0A1W2PRE2	83 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410	UFSP1	Q6NVU6	142 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410	ZFP2	Q6ZN57	461 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410	JPT2	Q9H910	190 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410		Q9UF83	564 aa		13.91	□□□□□ -0.18
CHD9-208	ENST00000563410	GAGE12J	A6NER3	117 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410		A8MWV9	139 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	GAGE1	Q13065	139 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	GAGE4	Q13068	117 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	GAGE5	Q13069	117 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	ZNF726P1	Q15940	193 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	GAGE13	Q4V321	117 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	PIK3CD-AS1	Q5SR53	167 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	ARL2-SNX15	V9GYD0	113 aa		13.9	□□□□□ -0.18
CHD9-208	ENST00000563410	TM2D2	Q9BX73	214 aa		13.89	□□□□□ -0.19
CHD9-208	ENST00000563410	FABP5P3	A8MUU1	101 aa		13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	C1QB	P02746	253 aa		13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	S100A4	P26447	101 aa	Known RBP	13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	LGALSL	Q3ZCW2	172 aa	Predicted RBP	13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	RPL7L1	Q6DKI1	246 aa	Known RBP	13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	OR2T35	Q8NGX2	323 aa		13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	SAMD10	Q9BYL1	202 aa		13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	MED28	Q9H204	178 aa		13.88	□□□□□ -0.19
CHD9-208	ENST00000563410	RNF222	A6NCQ9	220 aa		13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	ASIP	P42127	132 aa		13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	DAZ4	Q86SG3	579 aa	Known RBP	13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	C14orf178	Q8N769	122 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	DAZ3	Q9NR90	486 aa	Known RBP	13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	IL36B	Q9NZH7	164 aa		13.87	□□□□□ -0.19
CHD9-208	ENST00000563410	CRIP1	P50238	77 aa		13.86	□□□□□ -0.19
CHD9-208	ENST00000563410	DMRTA1	Q5VZB9	504 aa		13.86	□□□□□ -0.19
CHD9-208	ENST00000563410		Q86TA4	180 aa		13.86	□□□□□ -0.19
CHD9-208	ENST00000563410	TRAV8-3	A0A0A6YYJ7	113 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410	CTXND1	A0A1B0GTU2	59 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410	PEX7	O00628	323 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410	IFNA7	P01567	189 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410	UBE2G2	P60604	165 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410	DNLZ	Q5SXM8	178 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410		Q6ZSA8	131 aa		13.85	□□□□□ -0.19
CHD9-208	ENST00000563410		B4DEV8	164 aa		13.84	□□□□□ -0.19
CHD9-208	ENST00000563410		H3BVH4	76 aa		13.84	□□□□□ -0.19
CHD9-208	ENST00000563410	LECT2	O14960	151 aa		13.84	□□□□□ -0.19
CHD9-208	ENST00000563410	PTTG1	O95997	202 aa		13.84	□□□□□ -0.19
CHD9-208	ENST00000563410	ZC2HC1A	Q96GY0	325 aa		13.84	□□□□□ -0.19
CHD9-208	ENST00000563410	FAM74A7	A6NL05	159 aa		13.83	□□□□□ -0.2
CHD9-208	ENST00000563410	KRBOX1	C9JBD0	128 aa		13.83	□□□□□ -0.2
CHD9-208	ENST00000563410	GIP	P09681	153 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD9-208	ENST00000563410	FGF8	P55075	233 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD9-208	ENST00000563410	INO80E	Q8NBZ0	244 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD9-208	ENST00000563410		A0A087WWC5	75 aa		13.82	□□□□□ -0.2
CHD9-208	ENST00000563410	ARMS2	P0C7Q2	107 aa		13.82	□□□□□ -0.2
CHD9-208	ENST00000563410	COX8C	Q7Z4L0	72 aa		13.82	□□□□□ -0.2
CHD9-208	ENST00000563410	HIST1H2BA	Q96A08	127 aa		13.82	□□□□□ -0.2
CHD9-208	ENST00000563410	BORCS7-ASMT	A0A0B4J1R7	106 aa		13.81	□□□□□ -0.2
CHD9-208	ENST00000563410	TOR2A	Q5JU69	321 aa		13.81	□□□□□ -0.2
CHD9-208	ENST00000563410	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	FXYD6-FXYD2	A0A087WZ82	144 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	GRIFIN	A4D1Z8	144 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410		M0R036	132 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	RHOD	O00212	210 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	SH2D1A	O60880	128 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	NIT1	Q86X76	327 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	SYT8	Q8NBV8	401 aa		13.8	□□□□□ -0.2

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