RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CRIP1P50238 77 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 NHLRC2Q8NBF2 726 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 HECTD4Q9Y4D8 3996 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 H2AFB1P0C5Y9 115 aa10.7□□□□□ -0.7
VPS39-203ENST00000561797 LGALSLQ3ZCW2 172 aaPredicted RBP10.7□□□□□ -0.7
VPS39-203ENST00000561797 SLC25A29Q8N8R3 303 aa10.7□□□□□ -0.7
VPS39-203ENST00000561797 PTH2Q96A98 100 aa10.7□□□□□ -0.7
VPS39-203ENST00000561797 TCEAL7Q9BRU2 100 aa10.7□□□□□ -0.7
VPS39-203ENST00000561797 FAT2Q9NYQ8 4349 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 GRIFINA4D1Z8 144 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 KRBOX1C9JBD0 128 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 H3BVH4 76 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 CIDEAO60543 219 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 LTAP01374 205 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 LINC00315P59091 139 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 FAM162BQ5T6X4 162 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 WFDC10BQ8IUB3 73 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 PRADC1Q9BSG0 188 aa10.69□□□□□ -0.7
VPS39-203ENST00000561797 TMSB15BA0A087X1C1 80 aa10.68□□□□□ -0.7
VPS39-203ENST00000561797 TRBV6-1A0A0K0K1D8 114 aa10.68□□□□□ -0.7
VPS39-203ENST00000561797 SCO2A0A1W2PP80 73 aa10.68□□□□□ -0.7
VPS39-203ENST00000561797 COX8CQ7Z4L0 72 aa10.68□□□□□ -0.7
VPS39-203ENST00000561797 LY96Q9Y6Y9 160 aa10.68□□□□□ -0.7
VPS39-203ENST00000561797 ARMS2P0C7Q2 107 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 RHOHQ15669 191 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 ZNF674Q2M3X9 581 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 SH2D6Q7Z4S9 175 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 PARLQ9H300 379 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 JPT2Q9H910 190 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 IL36BQ9NZH7 164 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 TNFRSF18Q9Y5U5 241 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 PKD1P98161 4303 aa10.67□□□□□ -0.7
VPS39-203ENST00000561797 TRBV6-4A0A1B0GX49 114 aa10.66□□□□□ -0.7
VPS39-203ENST00000561797 A8MWV9 139 aa10.66□□□□□ -0.7
VPS39-203ENST00000561797 MED14OSP0DP75 135 aa10.66□□□□□ -0.7
VPS39-203ENST00000561797 BTF3P20290 206 aaKnown RBP10.66□□□□□ -0.7
VPS39-203ENST00000561797 CCL20P78556 96 aa10.66□□□□□ -0.7
VPS39-203ENST00000561797 TCTE3Q8IZS6 198 aa10.66□□□□□ -0.7
VPS39-203ENST00000561797 TRAV9-2A0A087WT02 112 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 C16orf90A8MZG2 172 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 S100A9P06702 114 aaKnown RBP10.65□□□□□ -0.7
VPS39-203ENST00000561797 MGST1P10620 155 aaKnown RBP10.65□□□□□ -0.7
VPS39-203ENST00000561797 DNLZQ5SXM8 178 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 DMRTA1Q5VZB9 504 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 Q6ZNX1 250 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 Q6ZSN1 163 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 GNG13Q9P2W3 67 aa10.65□□□□□ -0.7
VPS39-203ENST00000561797 EVI2AP22794 236 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 LINC01559Q495D7 138 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 PIK3CD-AS1Q5SR53 167 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 EIF5AL1Q6IS14 154 aaKnown RBP10.64□□□□□ -0.71
VPS39-203ENST00000561797 Q6ZRN7 208 aaPredicted RBP10.64□□□□□ -0.71
VPS39-203ENST00000561797 SPATA12Q7Z6I5 190 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 BAGE2Q86Y30 109 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 SYT8Q8NBV8 401 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 SAMD10Q9BYL1 202 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 PHLDA3Q9Y5J5 127 aa10.64□□□□□ -0.71
VPS39-203ENST00000561797 hCG_2014768A0A024R1R8 64 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 C1QBP02746 253 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 RAB5CP51148 216 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 ZFP2Q6ZN57 461 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 ATP6V0E2Q8NHE4 81 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 MANBALQ9NQG1 85 aa10.63□□□□□ -0.71
VPS39-203ENST00000561797 GAGE12JA6NER3 117 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 M0R381 172 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 DNAH10OSP0CZ25 163 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 SULT1A2P50226 295 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 TIRAPP58753 221 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 GAGE1Q13065 139 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 GAGE4Q13068 117 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 GAGE5Q13069 117 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 GAGE13Q4V321 117 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 OR10J3Q5JRS4 329 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 FAM74A4Q5TZK3 123 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 PRR27Q6MZM9 219 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 MSRB1Q9NZV6 116 aa10.62□□□□□ -0.71
VPS39-203ENST00000561797 TRAV1-1A0A0B4J248 108 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 TRAV8-6A0A0B4J262 113 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 IGHV3-38A0A0C4DH36 116 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 TEX46H3BTG2 121 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 CRYGDP07320 174 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 RPL19P84098 196 aaKnown RBP10.61□□□□□ -0.71
VPS39-203ENST00000561797 UFSP1Q6NVU6 142 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 C14orf178Q8N769 122 aaPredicted RBP10.61□□□□□ -0.71
VPS39-203ENST00000561797 MLST8Q9BVC4 326 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 SCRT2Q9NQ03 307 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 Q9UF83 564 aa10.61□□□□□ -0.71
VPS39-203ENST00000561797 A0A087WWL8 130 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 RPL35P42766 123 aaKnown RBP10.6□□□□□ -0.71
VPS39-203ENST00000561797 KRTAP10-2P60368 255 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 AKAP14Q86UN6 197 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 NFE4Q86UQ8 179 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 SLC51BQ86UW2 128 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 SFRP2Q96HF1 295 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 DERL1Q9BUN8 251 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 GTSF1LQ9H1H1 148 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 KIAA1109Q2LD37 5005 aa10.6□□□□□ -0.71
VPS39-203ENST00000561797 K7EP13 123 aa10.59□□□□□ -0.71
VPS39-203ENST00000561797 RHODO00212 210 aa10.59□□□□□ -0.71
VPS39-203ENST00000561797 LELP1Q5T871 98 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms