RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 CLTCL1P53675 1640 aa1.22□□□□□ -2.21
RTF1-207ENST00000561076 N4BP2Q86UW6 1770 aaPredicted RBP1.21□□□□□ -2.22
RTF1-207ENST00000561076 ABCA3Q99758 1704 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 DENND4CQ5VZ89 1909 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 ANKRD31Q8N7Z5 1873 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 SSSCA1O60232 199 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 IGLV1-51P01701 117 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 IL7P13232 177 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 SNCAP37840 140 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 KRTDAPP60985 99 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 UBE2L3P68036 154 aaKnown RBP1.21□□□□□ -2.22
RTF1-207ENST00000561076 MIR22HGQ0VDD5 57 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 IGFBP7Q16270 282 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 DEFB113Q30KQ7 82 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 PRR9Q5T870 116 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 C4orf33Q8N1A6 199 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 PPDPFLQ8WWR9 84 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 TMEM141Q96I45 108 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 CYYR1Q96J86 154 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 LINC00167Q96N53 147 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 TIMM21Q9BVV7 248 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 SNHG12Q9BXW3 62 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 KRTAP9-3Q9BYQ3 159 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 TMEM106BQ9NUM4 274 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 ZNF407Q9C0G0 2248 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 NUP98P52948 1817 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 IQGAP3Q86VI3 1631 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 CICQ96RK0 1608 aaPredicted RBP1.21□□□□□ -2.22
RTF1-207ENST00000561076 PHRF1Q9P1Y6 1649 aaKnown RBP1.21□□□□□ -2.22
RTF1-207ENST00000561076 NRXN3Q9Y4C0 1643 aa1.21□□□□□ -2.22
RTF1-207ENST00000561076 CPSF1Q10570 1443 aaKnown RBP1.21□□□□□ -2.22
RTF1-207ENST00000561076 POLEQ07864 2286 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 PARP4Q9UKK3 1724 aaKnown RBP1.2□□□□□ -2.22
RTF1-207ENST00000561076 TNRC6CQ9HCJ0 1690 aaKnown RBP1.2□□□□□ -2.22
RTF1-207ENST00000561076 FANCMQ8IYD8 2048 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 TUBGCP6Q96RT7 1819 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 COL2A1P02458 1487 aaPredicted RBP1.2□□□□□ -2.22
RTF1-207ENST00000561076 SCN8AQ9UQD0 1980 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 LRRC37A3O60309 1634 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 TRPM1Q7Z4N2 1603 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 A0A087WSZ3 146 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 UBE2L5PA0A1B0GUS4 154 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 TMEM30CPA0ZSE6 113 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 A8MU10 97 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 H3BQ15 152 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 IGLV3-19P01714 112 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 COX7CP15954 63 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 CBLN1P23435 193 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 KRTAP10-11P60412 298 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 RBM3P98179 157 aaKnown RBP1.2□□□□□ -2.22
RTF1-207ENST00000561076 RHOHQ15669 191 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 IQCJQ1A5X6 159 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 FOXI2Q6ZQN5 318 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 LINC00269Q8N2A0 174 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 C10orf105Q8TEF2 133 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 TVP23CQ96ET8 276 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 FAIMQ9NVQ4 179 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 NDUFA12Q9UI09 145 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 KLK9Q9UKQ9 250 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 CCL26Q9Y258 94 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 LHFPL6Q9Y693 200 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 CHD8Q9HCK8 2581 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 PEAK1Q9H792 1746 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 FMN2Q9NZ56 1722 aa1.2□□□□□ -2.22
RTF1-207ENST00000561076 EML6Q6ZMW3 1958 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 PLXNB1O43157 2135 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 PAPPAQ13219 1627 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 MYH7P12883 1935 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 MYO10Q9HD67 2058 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 GOLGB1Q14789 3259 aaKnown RBP1.19□□□□□ -2.22
RTF1-207ENST00000561076 IGKV3D-11A0A0A0MRZ8 115 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 TRBV6-8A0A0A6YYG3 113 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 TRGV4A0A0C4DH28 118 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 C2orf70A6NJV1 201 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 OOSP1A8MZH6 123 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 B4DSR2 109 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 H3BRN7 92 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 TRANK1O15050 2925 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 MPC2O95563 127 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 PRB4P10163 310 aaPredicted RBP1.19□□□□□ -2.22
RTF1-207ENST00000561076 LINC00315P59091 139 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 UBE2G1P62253 170 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 CCDC88AQ3V6T2 1871 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 SLC48A1Q6P1K1 146 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 IGFL3Q6UXB1 125 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 Q6ZS92 163 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 LINC00299Q6ZSB3 139 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 C5orf38Q86SI9 138 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 KRTAP11-1Q8IUC1 163 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 Q8N2B8 174 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 FAM19A2Q8N3H0 131 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 SPTSSBQ8NFR3 76 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 LSM10Q969L4 123 aaKnown RBP1.19□□□□□ -2.22
RTF1-207ENST00000561076 BET1LQ9NYM9 111 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 PRO2289Q9P1D8 64 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 MYO5AQ9Y4I1 1855 aaKnown RBP1.19□□□□□ -2.22
RTF1-207ENST00000561076 SCN4AP35499 1836 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 NHSQ6T4R5 1651 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 ALS2Q96Q42 1657 aa1.19□□□□□ -2.22
RTF1-207ENST00000561076 ABCC6O95255 1503 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms