RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 LYSTQ99698 3801 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 A8MWV9 139 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 H3BVH4 76 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 IGHV3-53P01767 116 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 ARMS2P0C7Q2 107 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 MGST1P10620 155 aaKnown RBP9.1□□□□□ -0.95
NEDD8-208ENST00000560427 RPS20P60866 119 aaKnown RBP9.1□□□□□ -0.95
NEDD8-208ENST00000560427 DAZAP1Q96EP5 407 aaKnown RBP9.1□□□□□ -0.95
NEDD8-208ENST00000560427 SCRT2Q9NQ03 307 aa9.1□□□□□ -0.95
NEDD8-208ENST00000560427 TRGV4A0A0C4DH28 118 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 XKRY2A2RUG3 117 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 C19orf71A6NCJ1 209 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 RS1O15537 224 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 FAM3BP58499 235 aaPredicted RBP9.09□□□□□ -0.95
NEDD8-208ENST00000560427 RAB14P61106 215 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 FHL2Q14192 279 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 RNF212Q495C1 297 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 POM121L12Q8N7R1 296 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 ZNF479Q96JC4 524 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 PHLDA3Q9Y5J5 127 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 LY96Q9Y6Y9 160 aa9.09□□□□□ -0.95
NEDD8-208ENST00000560427 MUC4Q99102 2169 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 TMSB15BA0A087X1C1 80 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 GRIFINA4D1Z8 144 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 PGPEP1LA6NFU8 196 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 PAX4O43316 350 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 NUDT3O95989 172 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 P01737 135 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 SRP19P09132 144 aaKnown RBP9.08□□□□□ -0.96
NEDD8-208ENST00000560427 OR5AL1P0C617 328 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 CRYBA4P53673 196 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 PEA15Q15121 130 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 ZNF575Q86XF7 245 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 ZFP82Q8N141 532 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 VSIG2Q96IQ7 327 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 HHLA3Q9XRX5 114 aa9.08□□□□□ -0.96
NEDD8-208ENST00000560427 A0A0J9YY99 117 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 RHODO00212 210 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 SNAI2O43623 268 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 SFTA3P0C7M3 94 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 RPL19P84098 196 aaKnown RBP9.07□□□□□ -0.96
NEDD8-208ENST00000560427 FAM74A3Q4VXF1 159 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 CFAP126Q5VTH2 177 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 ZFP2Q6ZN57 461 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 SSBP4Q9BWG4 385 aaPredicted RBP9.07□□□□□ -0.96
NEDD8-208ENST00000560427 RYR2Q92736 4967 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 SACSQ9NZJ4 4579 aa9.07□□□□□ -0.96
NEDD8-208ENST00000560427 NXPH4O95158 308 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 GATA1P15976 413 aaPredicted RBP9.06□□□□□ -0.96
NEDD8-208ENST00000560427 CEBPGP53567 150 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 UBE2DNLQ8IWF7 75 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 OR2D3Q8NGH3 330 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 OCC1Q8TAD7 63 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 PCNPQ8WW12 178 aaKnown RBP9.06□□□□□ -0.96
NEDD8-208ENST00000560427 SMIM7Q9BQ49 75 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 ICOSQ9Y6W8 199 aa9.06□□□□□ -0.96
NEDD8-208ENST00000560427 DNAH1Q9P2D7 4330 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 TRBV6-4A0A1B0GX49 114 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 A0A1W2PPQ1 181 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 ZNF727A8MUV8 499 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 K7EN84 100 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 CCL18P55774 89 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 DMRTA1Q5VZB9 504 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 FAM231DQ6ZW35 169 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 RYR3Q15413 4870 aa9.05□□□□□ -0.96
NEDD8-208ENST00000560427 A0A096LPF7 62 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 M0R381 172 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 IGLC6P0CF74 106 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 RHOHQ15669 191 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 MRPL23Q16540 153 aaKnown RBP9.04□□□□□ -0.96
NEDD8-208ENST00000560427 CLLU1Q5K131 121 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 SH2D6Q7Z4S9 175 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 FER1L6-AS1Q8NA97 138 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 SFRP2Q96HF1 295 aa9.04□□□□□ -0.96
NEDD8-208ENST00000560427 RPP21Q9H633 154 aaKnown RBP9.04□□□□□ -0.96
NEDD8-208ENST00000560427 F2Z2F3 143 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 SRIP30626 198 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 CT83Q5H943 113 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 SPANXN1Q5VSR9 72 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 UFSP1Q6NVU6 142 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 LINC01551Q86U37 167 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 NUDT10Q8NFP7 164 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 OR10AG1Q8NH19 301 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 NUDT11Q96G61 164 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 PRADC1Q9BSG0 188 aa9.03□□□□□ -0.96
NEDD8-208ENST00000560427 RNASE7Q9H1E1 156 aaKnown RBP9.03□□□□□ -0.96
NEDD8-208ENST00000560427 K7EQD1 137 aa9.02□□□□□ -0.97
NEDD8-208ENST00000560427 CACNG7P62955 275 aa9.02□□□□□ -0.97
NEDD8-208ENST00000560427 UPK3BQ9BT76 320 aa9.02□□□□□ -0.97
NEDD8-208ENST00000560427 C9JQL5 133 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 GYPEP15421 78 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 ERVFC1-1P60608 527 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 SRSF3P84103 164 aaKnown RBP9.01□□□□□ -0.97
NEDD8-208ENST00000560427 TMEM241Q24JQ0 296 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 WDR73Q6P4I2 378 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 NEGR1Q7Z3B1 354 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 SLC25A29Q8N8R3 303 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 AP1S3Q96PC3 154 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 NAT8Q9UHE5 227 aa9.01□□□□□ -0.97
NEDD8-208ENST00000560427 MRPS16Q9Y3D3 137 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms