RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 URB1-AS1Q96HZ7 61 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 CITED1Q99966 193 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 PHLDA3Q9Y5J5 127 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 JMJD1CQ15652 2540 aa9.34□□□□□ -0.91
USP3-213ENST00000559711 PPBPP02775 128 aa9.34□□□□□ -0.91
USP3-213ENST00000559711 CD7P09564 240 aa9.34□□□□□ -0.91
USP3-213ENST00000559711 EVI2AP22794 236 aa9.34□□□□□ -0.91
USP3-213ENST00000559711 SMIM15Q7Z3B0 74 aa9.34□□□□□ -0.91
USP3-213ENST00000559711 TIMM8BQ9Y5J9 83 aaPredicted RBP9.34□□□□□ -0.91
USP3-213ENST00000559711 IGHV3-16A0A0C4DH30 117 aa9.33□□□□□ -0.92
USP3-213ENST00000559711 CKS2P33552 79 aa9.33□□□□□ -0.92
USP3-213ENST00000559711 FXYD7P58549 80 aa9.33□□□□□ -0.92
USP3-213ENST00000559711 CHCHD1Q96BP2 118 aaKnown RBP9.33□□□□□ -0.92
USP3-213ENST00000559711 PRELID3AQ96N28 172 aa9.33□□□□□ -0.92
USP3-213ENST00000559711 SAMD10Q9BYL1 202 aa9.33□□□□□ -0.92
USP3-213ENST00000559711 CYSRT1A8MQ03 144 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 LINC00614P0C842 121 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 RBMY1A1P0DJD3 496 aaKnown RBP9.32□□□□□ -0.92
USP3-213ENST00000559711 RBMY1CP0DJD4 496 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 JOSD1Q15040 202 aaPredicted RBP9.32□□□□□ -0.92
USP3-213ENST00000559711 RBMY1FQ15415 496 aaKnown RBP9.32□□□□□ -0.92
USP3-213ENST00000559711 Q8N1Y9 231 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 C9orf85Q96MD7 179 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 TENM1Q9UKZ4 2725 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 M0R381 172 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 SPRY2O43597 315 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 HSBP1O75506 76 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 AMTP48728 403 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 RNASEKQ6P5S7 137 aaKnown RBP9.32□□□□□ -0.92
USP3-213ENST00000559711 TRPT1Q86TN4 253 aaKnown RBP9.32□□□□□ -0.92
USP3-213ENST00000559711 STHQ8IWL8 128 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 C20orf144Q9BQM9 153 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 C19orf73Q9NVV2 129 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 LAMTOR2Q9Y2Q5 125 aa9.32□□□□□ -0.92
USP3-213ENST00000559711 AGRNO00468 2067 aa9.31□□□□□ -0.92
USP3-213ENST00000559711 Q6ZWC4 215 aa9.31□□□□□ -0.92
USP3-213ENST00000559711 LINC00467Q9BRT7 94 aa9.31□□□□□ -0.92
USP3-213ENST00000559711 MDFICQ9P1T7 246 aa9.31□□□□□ -0.92
USP3-213ENST00000559711 TRGV11A0A075B6L2 103 aa9.3□□□□□ -0.92
USP3-213ENST00000559711 SMKR1H3BMG3 65 aa9.3□□□□□ -0.92
USP3-213ENST00000559711 PMCHP20382 165 aa9.3□□□□□ -0.92
USP3-213ENST00000559711 INSL3P51460 131 aa9.3□□□□□ -0.92
USP3-213ENST00000559711 FAM19A2Q8N3H0 131 aa9.3□□□□□ -0.92
USP3-213ENST00000559711 NCR2O95944 276 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 NPYP01303 97 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 DPH3P1Q9H4G8 78 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 ATRQ13535 2644 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 GAS8-AS1O95177 125 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 INSP01308 110 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 POM121L12Q8N7R1 296 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 PRSS3P2Q8NHM4 247 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 MRAP2Q96G30 205 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 AP1S3Q96PC3 154 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 NIT2Q9NQR4 276 aa9.29□□□□□ -0.92
USP3-213ENST00000559711 TEP1Q99973 2627 aaKnown RBP9.28□□□□□ -0.92
USP3-213ENST00000559711 CBY3A6NI87 242 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 TNFRSF6BO95407 300 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 IFI27P40305 119 aaPredicted RBP9.28□□□□□ -0.92
USP3-213ENST00000559711 NUTF2P61970 127 aaKnown RBP9.28□□□□□ -0.92
USP3-213ENST00000559711 C9orf66Q5T8R8 295 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 DEFB125Q8N687 156 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 C14orf178Q8N769 122 aaPredicted RBP9.28□□□□□ -0.92
USP3-213ENST00000559711 GSN-AS1Q9NRJ2 163 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 AP5S1Q9NUS5 200 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 KIF25-AS1Q9Y6Z4 181 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 VWFP04275 2813 aa9.28□□□□□ -0.92
USP3-213ENST00000559711 IGHV1-24A0A0C4DH33 117 aa9.27□□□□□ -0.93
USP3-213ENST00000559711 PRSS47A8MTI9 375 aa9.27□□□□□ -0.93
USP3-213ENST00000559711 LINC00315P59091 139 aa9.27□□□□□ -0.93
USP3-213ENST00000559711 FA2HQ7L5A8 372 aa9.27□□□□□ -0.93
USP3-213ENST00000559711 NRACQ8N912 160 aa9.27□□□□□ -0.93
USP3-213ENST00000559711 LOC389332A0A1B0GUA5 103 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 GATA1P15976 413 aaPredicted RBP9.26□□□□□ -0.93
USP3-213ENST00000559711 CDPF1Q6NVV7 123 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 SYT8Q8NBV8 401 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 WFDC9Q8NEX5 89 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 SPATA3Q8NHX4 192 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 LINC01587Q99440 93 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 MAP1LC3AQ9H492 121 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 LINC01546A6NGU7 62 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 KRTAP24-1Q3LI83 254 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 XCL2Q9UBD3 114 aa9.26□□□□□ -0.93
USP3-213ENST00000559711 TRAV26-2A0A0B4J265 109 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 GIG44P09565 113 aaPredicted RBP9.25□□□□□ -0.93
USP3-213ENST00000559711 PMCHL1Q16048 86 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 C1orf158Q8N1D5 194 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 PTH2Q96A98 100 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 WFDC10AQ9H1F0 79 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 JPT2Q9H910 190 aa9.25□□□□□ -0.93
USP3-213ENST00000559711 NXT2Q9NPJ8 142 aaKnown RBP9.25□□□□□ -0.93
USP3-213ENST00000559711 SCGB1D1O95968 90 aa9.24□□□□□ -0.93
USP3-213ENST00000559711 SMIM17P0DL12 118 aa9.24□□□□□ -0.93
USP3-213ENST00000559711 HTN1P15515 57 aa9.24□□□□□ -0.93
USP3-213ENST00000559711 PIK3CD-AS1Q5SR53 167 aa9.24□□□□□ -0.93
USP3-213ENST00000559711 MCRIP2Q9BUT9 160 aaKnown RBP9.24□□□□□ -0.93
USP3-213ENST00000559711 MUC4Q99102 2169 aa9.24□□□□□ -0.93
USP3-213ENST00000559711 IGLV2-18A0A075B6J9 118 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 PRM2P04554 102 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 C3orf79P0CE67 100 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 KRTDAPP60985 99 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms