RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 HIVEP3Q5T1R4 2406 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 NEBP20929 6669 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 AFDNP55196 1824 aaKnown RBP0.34□□□□□ -2.36
USP3-209ENST00000558925 CPDO75976 1380 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 BPTFQ12830 3046 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 A0A0C4DFX4 3053 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 LOC285556D6RIA3 1793 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 A0A0D9SG42 100 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 FAM236AA0A1B0GUQ0 79 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 FAM236BA0A1B0GV22 79 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 TPST1O60507 370 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 SPINT3P49223 89 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 ASB16-AS1Q495Z4 193 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 XAF1Q6GPH4 301 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 SNX29P2Q8IUI4 249 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 C5orf56Q8N8D9 126 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 LZICQ8WZA0 190 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 ANP32BQ92688 251 aaKnown RBP0.33□□□□□ -2.36
USP3-209ENST00000558925 SPANXA1Q9NS26 97 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 CCDC168Q8NDH2 2452 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 FSIP2Q5CZC0 6907 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 ZNF292O60281 2723 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 NBEAL2Q6ZNJ1 2754 aa0.33□□□□□ -2.36
USP3-209ENST00000558925 MAP1BP46821 2468 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 WDR97A6NE52 1622 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 VIRMAQ69YN4 1812 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 CXorf51AA0A1B0GTR3 108 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 PNMA8CA0A1B0GUJ8 204 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 FXYD1O00168 92 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 CCKP06307 115 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 POLR2JP52435 117 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 CAV3P56539 151 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 PLGLB1Q02325 96 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 SMIM21Q3B7S5 101 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 UNQ5815/PRO19632Q6UWF5 114 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 KRTAP19-3Q7Z4W3 81 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 TSTD1Q8NFU3 115 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 DMAC1Q96GE9 116 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 ATG5Q9H1Y0 275 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 SPANXCQ9NY87 97 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 MRPL35Q9NZE8 188 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 ZCCHC6Q5VYS8 1495 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 ZFYVE26Q68DK2 2539 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 FRAS1Q86XX4 4008 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 CREBBPQ92793 2442 aa0.32□□□□□ -2.36
USP3-209ENST00000558925 KIAA0100Q14667 2235 aaKnown RBP0.32□□□□□ -2.36
USP3-209ENST00000558925 KIF13AQ9H1H9 1805 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 PTPRGP23470 1445 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 PLXNA2O75051 1894 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 C2CD3Q4AC94 2353 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 ERCC6Q03468 1493 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 FLNAP21333 2647 aaKnown RBP0.31□□□□□ -2.36
USP3-209ENST00000558925 HIGD1CA8MV81 97 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 M0R2Z0 102 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 PITX3O75364 302 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 MPC1LP0DKB6 136 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 SLC25A6P12236 298 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 EVI2AP22794 236 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 NCS1P62166 190 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 SPINK9Q5DT21 86 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 C6orf52Q5T4I8 152 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 MIC13Q5XKP0 118 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 Q6ZS92 163 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 DEFB132Q7Z7B7 95 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 ATOH7Q8N100 152 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 NOP16Q9Y3C1 178 aaKnown RBP0.31□□□□□ -2.36
USP3-209ENST00000558925 GCN1Q92616 2671 aaKnown RBP0.31□□□□□ -2.36
USP3-209ENST00000558925 TTC28Q96AY4 2481 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 DOCK11Q5JSL3 2073 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 PCNTO95613 3336 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 WDFY4Q6ZS81 3184 aa0.31□□□□□ -2.36
USP3-209ENST00000558925 FAM208BQ5VWN6 2430 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 TNRC18O15417 2968 aaPredicted RBP0.3□□□□□ -2.36
USP3-209ENST00000558925 KALRNO60229 2985 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 CEP152O94986 1710 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 USP9YO00507 2555 aaPredicted RBP0.3□□□□□ -2.36
USP3-209ENST00000558925 POLQO75417 2590 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 DLEC1Q9Y238 1755 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 AHNAKQ09666 5890 aaKnown RBP0.3□□□□□ -2.36
USP3-209ENST00000558925 PDE4DIPQ5VU43 2346 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 IGSF10Q6WRI0 2623 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 TRBV10-1A0A0K0K1A3 114 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 K7ERU9 68 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 M0R2P5 195 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 RBP4P02753 201 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 TSPAN19P0C672 248 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 ZNF137PP52743 207 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 SMCO1Q147U7 214 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 ATP11AUNQ6ZP68 121 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 CTAGE3PQ8IX95 158 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 ATP6V0E2Q8NHE4 81 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 DYNLRB2Q8TF09 96 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 MAGOHBQ96A72 148 aaKnown RBP0.3□□□□□ -2.36
USP3-209ENST00000558925 COPZ2Q9P299 210 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 SPG11Q96JI7 2443 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 FLNCQ14315 2725 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 F5P12259 2224 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 RREB1Q92766 1687 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 BCORL1Q5H9F3 1711 aa0.3□□□□□ -2.36
USP3-209ENST00000558925 FHAD1B1AJZ9 1412 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms