RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 KRTAP1-3Q8IUG1 177 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 C14orf178Q8N769 122 aaPredicted RBP7.98□□□□□ -1.13
CUX1-217ENST00000558836 FSHBP01225 129 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 HOXD3P31249 432 aaPredicted RBP7.98□□□□□ -1.13
CUX1-217ENST00000558836 CACNG7P62955 275 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 Q6ZVH6 145 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 C11orf44Q8N8P7 122 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 MAP1LC3AQ9H492 121 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 TRAV12-3A0A0B4J271 114 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 TRAV21A0A0B4J279 112 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 CBY3A6NI87 242 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 LEPP41159 167 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 SLURP1P55000 103 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 PET117Q6UWS5 81 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 STPG4Q8N801 248 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 HBDP02042 147 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 LINC01545Q5VT33 79 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 LAMTOR2Q9Y2Q5 125 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 PHLDA3Q9Y5J5 127 aa7.97□□□□□ -1.13
CUX1-217ENST00000558836 K7EMT4 169 aa7.96□□□□□ -1.14
CUX1-217ENST00000558836 RNF151Q2KHN1 245 aa7.96□□□□□ -1.14
CUX1-217ENST00000558836 OR2K2Q8NGT1 345 aa7.96□□□□□ -1.14
CUX1-217ENST00000558836 ZNF479Q96JC4 524 aa7.96□□□□□ -1.14
CUX1-217ENST00000558836 JPT2Q9H910 190 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 MGPP08493 103 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 LGALS1P09382 135 aaKnown RBP7.95□□□□□ -1.14
CUX1-217ENST00000558836 ASIPP42127 132 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 IFI27L1Q96BM0 104 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 RPL39LQ96EH5 51 aaKnown RBP7.95□□□□□ -1.14
CUX1-217ENST00000558836 FAM19A4Q96LR4 140 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 DKK2Q9UBU2 259 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 ZNF580Q9UK33 172 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 LENEPQ9Y5L5 61 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 PPBPP02775 128 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 RNASE3P12724 160 aaKnown RBP7.95□□□□□ -1.14
CUX1-217ENST00000558836 ID1P41134 155 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 NRACQ8N912 160 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 TMEM158Q8WZ71 300 aa7.95□□□□□ -1.14
CUX1-217ENST00000558836 A4D1N5 150 aa7.94□□□□□ -1.14
CUX1-217ENST00000558836 PTTG1IPP53801 180 aa7.94□□□□□ -1.14
CUX1-217ENST00000558836 SPINK13Q1W4C9 94 aa7.94□□□□□ -1.14
CUX1-217ENST00000558836 HTN1P15515 57 aa7.94□□□□□ -1.14
CUX1-217ENST00000558836 ADAMTSL5Q6ZMM2 481 aa7.94□□□□□ -1.14
CUX1-217ENST00000558836 ELANEP08246 267 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 CD7P09564 240 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 TCTEX1D4Q5JR98 221 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 OR11H1Q8NG94 326 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 UBE2E2Q96LR5 201 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 KMT2BQ9UMN6 2715 aaPredicted RBP7.93□□□□□ -1.14
CUX1-217ENST00000558836 PRM2P04554 102 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 MPV17L2Q567V2 206 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 FAM159AQ6UWV7 190 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 ST20Q9HBF5 79 aa7.93□□□□□ -1.14
CUX1-217ENST00000558836 SETXQ7Z333 2677 aaKnown RBP7.93□□□□□ -1.14
CUX1-217ENST00000558836 A0A087WWL8 130 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 CD5LO43866 347 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 PRSS1P07477 247 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 SNRPD3P62318 126 aaKnown RBP7.92□□□□□ -1.14
CUX1-217ENST00000558836 COL5A1-AS1Q5SY13 56 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 NEGR1Q7Z3B1 354 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 SCRT2Q9NQ03 307 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 IGLV2-18A0A075B6J9 118 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 KLLNB2CW77 178 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 SLC25A34Q6PIV7 304 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 ERASQ7Z444 233 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 LRRC75A-AS1Q8N1F1 130 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 NXT2Q9NPJ8 142 aaKnown RBP7.92□□□□□ -1.14
CUX1-217ENST00000558836 IGHV4-4A0A075B6R2 117 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 A0A1W2PRX2 142 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 K7EQG2 157 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 FCER1GP30273 86 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 CSTL1Q9H114 145 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 MDFICQ9P1T7 246 aa7.92□□□□□ -1.14
CUX1-217ENST00000558836 KNCNA6PVL3 124 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 SMIM17P0DL12 118 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 Q8N8P6 123 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 RASL10AQ92737 203 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 ANK3Q12955 4377 aaKnown RBP7.91□□□□□ -1.14
CUX1-217ENST00000558836 A0A0J9YX75 114 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 NUDT3O95989 172 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 FAM74A4Q5TZK3 123 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 MYOZ3Q8TDC0 251 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 SPXQ9BT56 116 aa7.91□□□□□ -1.14
CUX1-217ENST00000558836 MRPS16Q9Y3D3 137 aaKnown RBP7.91□□□□□ -1.14
CUX1-217ENST00000558836 FN1P02751 2386 aaKnown RBP7.91□□□□□ -1.14
CUX1-217ENST00000558836 TMEM89A2RUT3 159 aa7.9□□□□□ -1.14
CUX1-217ENST00000558836 APRG1Q8IVJ8 170 aa7.9□□□□□ -1.14
CUX1-217ENST00000558836 FOXC2Q99958 501 aa7.9□□□□□ -1.14
CUX1-217ENST00000558836 NACAE9PAV3 2078 aa7.9□□□□□ -1.14
CUX1-217ENST00000558836 CCL25O15444 150 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 KLHL30-AS1Q8NEE0 82 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 DPF1Q92782 380 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 CITED1Q99966 193 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 DPH3P1Q9H4G8 78 aa7.9□□□□□ -1.15
CUX1-217ENST00000558836 NMUP48645 174 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 LAGE3Q14657 143 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 DLX4Q92988 240 aaPredicted RBP7.89□□□□□ -1.15
CUX1-217ENST00000558836 HIVEP2P31629 2446 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 C2CD3Q4AC94 2353 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms