RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TRAV4A0A0B4J268 109 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 PAX4O43316 350 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 SRP19P09132 144 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 FHL2Q14192 279 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 SYT8Q8NBV8 401 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 OR2D3Q8NGH3 330 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 HHLA3Q9XRX5 114 aa8.02□□□□□ -1.13
CCDC88C-212ENST00000556767 IGHV3-73A0A0B4J1V6 119 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 ZNF727A8MUV8 499 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 M0R381 172 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 P01737 135 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 SLAQ13239 276 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 PEA15Q15121 130 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 DNLZQ5SXM8 178 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 POM121L12Q8N7R1 296 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 OCC1Q8TAD7 63 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 SMIM7Q9BQ49 75 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 PRO0255Q9UI72 69 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 MUC4Q99102 2169 aa8.01□□□□□ -1.13
CCDC88C-212ENST00000556767 RS1O15537 224 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 CRYBA4P53673 196 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 RPS20P60866 119 aaKnown RBP8□□□□□ -1.13
CCDC88C-212ENST00000556767 SSTP61278 116 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 CFAP126Q5VTH2 177 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 DMRTA1Q5VZB9 504 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 ZFP82Q8N141 532 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 PTH2Q96A98 100 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 VSIG2Q96IQ7 327 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 TPPP3Q9BW30 176 aa8□□□□□ -1.13
CCDC88C-212ENST00000556767 MUC21A0A0G2JKD1 596 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 MUC21A0A140T8X8 626 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 XKRY2A2RUG3 117 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 C19orf71A6NCJ1 209 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 A8MWV9 139 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 H3BNG1 76 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 NDUFS6O75380 124 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 CXCL1P09341 107 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 MED14OSP0DP75 135 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 GZMBP10144 247 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 CCL18P55774 89 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 NUDT10Q8NFP7 164 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 NUDT11Q96G61 164 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 RNASE7Q9H1E1 156 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 TENM2Q9NT68 2774 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 ICOSQ9Y6W8 199 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 NACAE9PAV3 2078 aa7.99□□□□□ -1.13
CCDC88C-212ENST00000556767 CSMD3Q7Z407 3707 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 K7EN84 100 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 CIDEAO60543 219 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 SRSF3P84103 164 aaKnown RBP7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 FAM74A4Q5TZK3 123 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 SPANXN1Q5VSR9 72 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 ZNF575Q86XF7 245 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 OR10AG1Q8NH19 301 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 JPT2Q9H910 190 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 SCRT2Q9NQ03 307 aa7.98□□□□□ -1.13
CCDC88C-212ENST00000556767 A0A096LPF7 62 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 C9JQL5 133 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 GYPEP15421 78 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 ERVFC1-1P60608 527 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 MRPL23Q16540 153 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 PIK3CD-AS1Q5SR53 167 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 FER1L6-AS1Q8NA97 138 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 SAMD10Q9BYL1 202 aa7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 RPP21Q9H633 154 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-212ENST00000556767 A0A087WWL8 130 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 SNAI2O43623 268 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 GATCO43716 136 aaKnown RBP7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 OR5AL1P0C617 328 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 GATA1P15976 413 aaPredicted RBP7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 SRIP30626 198 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 TMEM241Q24JQ0 296 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 RNF212Q495C1 297 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 FAM74A3Q4VXF1 159 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 PRADC1Q9BSG0 188 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 SSBP4Q9BWG4 385 aaPredicted RBP7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 SMDT1Q9H4I9 107 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 LY96Q9Y6Y9 160 aa7.96□□□□□ -1.14
CCDC88C-212ENST00000556767 LOC100131303A0A0U1RQF7 123 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 K7EQD1 137 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 RHODO00212 210 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 IFITM2Q01629 132 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 RHOHQ15669 191 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 ESRGQ1W209 222 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 SOHLH1Q5JUK2 328 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 CLLU1Q5K131 121 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 ZFP2Q6ZN57 461 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 LINC01551Q86U37 167 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 SLC25A29Q8N8R3 303 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 SFRP2Q96HF1 295 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 LINC00588Q9Y4M8 146 aa7.95□□□□□ -1.14
CCDC88C-212ENST00000556767 PLECQ15149 4684 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 IGLV2-18A0A075B6J9 118 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 TRBV6-4A0A1B0GX49 114 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 A0A1W2PPQ1 181 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 IGLC6P0CF74 106 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 CACNG7P62955 275 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 ADIRFQ15847 76 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 FAM231DQ6ZW35 169 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 NEGR1Q7Z3B1 354 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms