RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ZNF815PA8K554 130 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 FXYD2P54710 66 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 C10orf99Q6UWK7 81 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 MRPL16Q9NX20 251 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 PSMB2P49721 201 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 C5orf56Q8N8D9 126 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 EDN2P20800 178 aa9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 MRPS12O15235 138 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 DEFB136Q30KP8 78 aa9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 C2orf66Q6UXQ4 117 aa9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 OR9G4Q8NGQ1 327 aa9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 IGHV4-59P01825 116 aa9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 SUMO2P61956 95 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-211ENST00000556726 Q8N8P6 123 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 A0A0U1RRA0 63 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 SNRPD3P62318 126 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 FBXL19-AS1Q494R0 122 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 ITLN2Q8WWU7 325 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 C20orf173Q96LM9 149 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 DPH3P1Q9H4G8 78 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 NPC2P61916 151 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 PRR9Q5T870 116 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 C11orf71Q6IPW1 123 aa9.3□□□□□ -0.92
CCDC88C-211ENST00000556726 RNASE13Q5GAN3 156 aaKnown RBP9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 KLHL30-AS1Q8NEE0 82 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 AJUBAQ96IF1 538 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 DYNLRB2Q8TF09 96 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 ZFAND3Q9H8U3 227 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 CUBNO60494 3623 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 TRBV25-1A0A075B6N4 114 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 A0A096LNJ9 63 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 A0A1B0GWB2 263 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 OVOL1O14753 267 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 MSMBP08118 114 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 HERVK_113P61574 105 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 DGAT2L7PQ6IED9 249 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 C1orf122Q6ZSJ8 110 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 SPOCK3Q9BQ16 436 aa9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 DAZ1Q9NQZ3 744 aaKnown RBP9.29□□□□□ -0.92
CCDC88C-211ENST00000556726 RNF223E7ERA6 249 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 IGLC6P0CF74 106 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 SMIM2Q9BVW6 85 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 TP53TG1Q9Y2A0 90 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 C9orf118A6NHY6 69 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 SLC25A16P16260 332 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 C2orf91Q6ZV80 131 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 RNF185Q96GF1 192 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 CRYBG3Q68DQ2 2970 aa9.28□□□□□ -0.92
CCDC88C-211ENST00000556726 IGKV3OR2-268A0A0C4DH90 116 aa9.27□□□□□ -0.92
CCDC88C-211ENST00000556726 RPL39P62891 51 aaKnown RBP9.27□□□□□ -0.92
CCDC88C-211ENST00000556726 ODF1Q14990 250 aa9.27□□□□□ -0.92
CCDC88C-211ENST00000556726 H3BMG7 143 aa9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 ORMDL2Q53FV1 153 aa9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 ZNF493Q6ZR52 646 aa9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 FASNP49327 2511 aaKnown RBP9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 TRAV8-2A0A0B4J237 113 aa9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 CRXO43186 299 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-211ENST00000556726 ITPR1Q14643 2758 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 H7C1H1 209 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 IGHG4P01861 327 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 DEFB112Q30KQ8 113 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 ETDBQ3ZM63 59 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 LINC01559Q495D7 138 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 FAM223BA6NKX1 122 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 J3QR89 54 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 DUSP14O95147 198 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 LGALS3P17931 250 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 ZNF876PQ49A33 203 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 FAM223AQ8IWN6 122 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 CELSR1Q9NYQ6 3014 aa9.26□□□□□ -0.93
CCDC88C-211ENST00000556726 IGHV3-16A0A0C4DH30 117 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 CLPSL1A2RUU4 121 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 ADARB2-AS1A8MUL3 147 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 SMAGPQ0VAQ4 97 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 PRADC1Q9BSG0 188 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 GTSF1LQ9H1H1 148 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 H3BRM9 83 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 PRM2P04554 102 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 BOD1L2Q8IYS8 172 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 Q8N6K4 173 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 TRAV2A0A0B4J234 112 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 B4DSR2 109 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 COX6B1P14854 86 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 PHLDA1Q8WV24 401 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 OPRPNQ99935 248 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 PGPEP1Q9NXJ5 209 aa9.25□□□□□ -0.93
CCDC88C-211ENST00000556726 SDHAF1A6NFY7 115 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 PRSS29PA6NIE9 313 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 SYT8Q8NBV8 401 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 ZANQ9Y493 2812 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 A0A1W2PPM0 123 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 HLA-DRB4P13762 266 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 C16orf54Q6UWD8 224 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 MAPKAPK5-AS1Q8N8E1 139 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 HLA-DRB4X5D2U9 266 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 NDUFA4O00483 81 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 DEFB131AP59861 70 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 ADAMTSL5Q6ZMM2 481 aa9.24□□□□□ -0.93
CCDC88C-211ENST00000556726 SH2D6Q7Z4S9 175 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms