RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PRSS29PA6NIE9 313 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 RTL8CO15255 209 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 IFNA1P01562 189 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 RNASE3P12724 160 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 BTF3P20290 206 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 DNLZQ5SXM8 178 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 IL36BQ9NZH7 164 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 SCO2A0A1W2PP80 73 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 RS1O15537 224 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 SH2D1AO60880 128 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 GYPEP15421 78 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 ZNF674Q2M3X9 581 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 ZNF506Q5JVG8 444 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 SYT8Q8NBV8 401 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 GNG13Q9P2W3 67 aa14.25□□□□□ -0.13
CCDC88C-210ENST00000555995 A8MWV9 139 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 K7EQD1 137 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 GATA1P15976 413 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 LINC01559Q495D7 138 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 CFAP126Q5VTH2 177 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 C6orf223Q8N319 242 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 HECTD4Q9Y4D8 3996 aa14.24□□□□□ -0.13
CCDC88C-210ENST00000555995 KRBOX1C9JBD0 128 aa14.23□□□□□ -0.13
CCDC88C-210ENST00000555995 RHOHQ15669 191 aa14.23□□□□□ -0.13
CCDC88C-210ENST00000555995 PRADC1Q9BSG0 188 aa14.23□□□□□ -0.13
CCDC88C-210ENST00000555995 TRBV6-4A0A1B0GX49 114 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 PGPEP1LA6NFU8 196 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 MGST1P10620 155 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 TAGLN2P37802 199 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 BAGE2Q86Y30 109 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 C9orf62Q8N4C0 152 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 C11orf52Q96A22 123 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 BOLA1Q9Y3E2 137 aa14.22□□□□□ -0.13
CCDC88C-210ENST00000555995 H3BVH4 76 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 M0R036 132 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 SIVA1O15304 175 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 CRIP1P50238 77 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 LYPD5Q6UWN5 251 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 ZFP2Q6ZN57 461 aa14.21□□□□□ -0.13
CCDC88C-210ENST00000555995 RHODO00212 210 aa14.2□□□□□ -0.14
CCDC88C-210ENST00000555995 PDE6DO43924 150 aa14.2□□□□□ -0.14
CCDC88C-210ENST00000555995 NXPH4O95158 308 aa14.2□□□□□ -0.14
CCDC88C-210ENST00000555995 CXCL1P09341 107 aa14.2□□□□□ -0.14
CCDC88C-210ENST00000555995 K7EP13 123 aa14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 RPL35P42766 123 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 TIRAPP58753 221 aa14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 MEF2BQ02080 365 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 NHLRC2Q8NBF2 726 aa14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 MLST8Q9BVC4 326 aa14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 PHLDA3Q9Y5J5 127 aa14.19□□□□□ -0.14
CCDC88C-210ENST00000555995 DNAH17Q9UFH2 4485 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 ARMS2P0C7Q2 107 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 MED14OSP0DP75 135 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 CCL20P78556 96 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 SLC25A29Q8N8R3 303 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 SMIM12Q96EX1 92 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 PARLQ9H300 379 aa14.18□□□□□ -0.14
CCDC88C-210ENST00000555995 DNAH2Q9P225 4427 aa14.17□□□□□ -0.14
CCDC88C-210ENST00000555995 A0A1B0GVY2 172 aa14.17□□□□□ -0.14
CCDC88C-210ENST00000555995 BCL2P10415 239 aa14.17□□□□□ -0.14
CCDC88C-210ENST00000555995 ZFP82Q8N141 532 aa14.17□□□□□ -0.14
CCDC88C-210ENST00000555995 TRAV9-2A0A087WT02 112 aa14.16□□□□□ -0.14
CCDC88C-210ENST00000555995 GRIFINA4D1Z8 144 aa14.16□□□□□ -0.14
CCDC88C-210ENST00000555995 BLOC1S1P78537 153 aa14.16□□□□□ -0.14
CCDC88C-210ENST00000555995 VAX2Q9UIW0 290 aa14.16□□□□□ -0.14
CCDC88C-210ENST00000555995 TMSB15BA0A087X1C1 80 aa14.15□□□□□ -0.14
CCDC88C-210ENST00000555995 SCRT2Q9NQ03 307 aa14.15□□□□□ -0.14
CCDC88C-210ENST00000555995 LY96Q9Y6Y9 160 aa14.15□□□□□ -0.14
CCDC88C-210ENST00000555995 IGHV3-73A0A0B4J1V6 119 aa14.14□□□□□ -0.15
CCDC88C-210ENST00000555995 PRR27Q6MZM9 219 aa14.14□□□□□ -0.15
CCDC88C-210ENST00000555995 BIN3Q9NQY0 253 aa14.14□□□□□ -0.15
CCDC88C-210ENST00000555995 FAT2Q9NYQ8 4349 aa14.13□□□□□ -0.15
CCDC88C-210ENST00000555995 LOC100131303A0A0U1RQF7 123 aa14.13□□□□□ -0.15
CCDC88C-210ENST00000555995 CENPWQ5EE01 88 aa14.13□□□□□ -0.15
CCDC88C-210ENST00000555995 DMRTA1Q5VZB9 504 aa14.13□□□□□ -0.15
CCDC88C-210ENST00000555995 KRTAP1-5Q9BYS1 174 aa14.13□□□□□ -0.15
CCDC88C-210ENST00000555995 M0R381 172 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 EVI2AP22794 236 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 GNG4P50150 75 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 C10orf126Q8N4M7 172 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 DAZAP1Q96EP5 407 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 SFRP2Q96HF1 295 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 DERL1Q9BUN8 251 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 MED9Q9NWA0 146 aa14.12□□□□□ -0.15
CCDC88C-210ENST00000555995 TRAV8-6A0A0B4J262 113 aa14.11□□□□□ -0.15
CCDC88C-210ENST00000555995 ALKAL2Q6UX46 152 aa14.11□□□□□ -0.15
CCDC88C-210ENST00000555995 OR5AL1P0C617 328 aa14.1□□□□□ -0.15
CCDC88C-210ENST00000555995 RPS20P60866 119 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-210ENST00000555995 UFSP1Q6NVU6 142 aa14.1□□□□□ -0.15
CCDC88C-210ENST00000555995 NFE4Q86UQ8 179 aa14.1□□□□□ -0.15
CCDC88C-210ENST00000555995 ATP6V0E2Q8NHE4 81 aa14.1□□□□□ -0.15
CCDC88C-210ENST00000555995 XKRY2A2RUG3 117 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 SNAI2O43623 268 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 DNAH10OSP0CZ25 163 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 FAM74A4Q5TZK3 123 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 WFDC10BQ8IUB3 73 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 GTSF1LQ9H1H1 148 aa14.09□□□□□ -0.15
CCDC88C-210ENST00000555995 LINC00315P59091 139 aa14.08□□□□□ -0.16
CCDC88C-210ENST00000555995 RPL19P84098 196 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-210ENST00000555995 TNP2Q05952 138 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms