RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MRPL51Q4U2R6 128 aaKnown RBP5.9□□□□□ -1.46
LIMA1-216ENST00000552909 ZC2HC1BQ5TFG8 222 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 ZFAND6Q6FIF0 208 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 DPM3Q9P2X0 92 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 VPREB3Q9UKI3 123 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 FBN3Q75N90 2809 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 IGHV1-3A0A0C4DH29 117 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM213A2RRL7 107 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 ZNF785A8K8V0 405 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 NPYP01303 97 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 FCER1GP30273 86 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 FHL3Q13643 280 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 TWIST1Q15672 202 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 LINC01559Q495D7 138 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 NFE4Q86UQ8 179 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 GLMPQ8WWB7 406 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 DLX4Q92988 240 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-216ENST00000552909 MRPL36Q9P0J6 103 aaKnown RBP5.9□□□□□ -1.47
LIMA1-216ENST00000552909 UFC1Q9Y3C8 167 aa5.9□□□□□ -1.47
LIMA1-216ENST00000552909 ATP5LO75964 103 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 LEPP41159 167 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 SMCPP49901 116 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-216ENST00000552909 HERV-K104P63124 156 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 WT1-ASQ06250 92 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 LYZL1Q6UWQ5 148 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM219Q86XT9 240 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 EXOC3-AS1Q8N2X6 119 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM75Q8N9X5 138 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 OR4C13Q8NGP0 309 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 HARBI1Q96MB7 349 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 PRSS29PA6NIE9 313 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 MINOS1Q5TGZ0 78 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 Q6ZSV7 163 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 C3orf56Q8N813 242 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 LINC01006Q8NI28 216 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 PPDPFLQ8WWR9 84 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM190Q8WZ59 177 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 TRGV9Q99603 122 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 MAP1LC3AQ9H492 121 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 SIGLEC9Q9Y336 463 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 MINOS1-NBL1R4GNA1 71 aa5.89□□□□□ -1.47
LIMA1-216ENST00000552909 E7EUB6 86 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 SMKR1H3BMG3 65 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 TIMM23O14925 209 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 IL4P05112 153 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 MAPKAPK5-AS1Q8N8E1 139 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 SLC25A39Q9BZJ4 359 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-216ENST00000552909 HIGD1AQ9Y241 93 aa5.88□□□□□ -1.47
LIMA1-216ENST00000552909 TRBV7-3A0A075B6L6 115 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 A0A1W2PPI3 338 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 NCBP2LA6PVI3 153 aaKnown RBP5.87□□□□□ -1.47
LIMA1-216ENST00000552909 LINC01619G3V211 115 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 CRIP1P50238 77 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 KRTAP10-3P60369 221 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 MORN3Q6PF18 240 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-216ENST00000552909 Q6ZS46 218 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 TEN1Q86WV5 123 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 ASCL2Q99929 193 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM14CQ9P0S9 112 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 TMSB15BA0A087X1C1 80 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 A6NDX4 124 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 LINC01546A6NGU7 62 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 NDUFA7O95182 113 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 CNIH1O95406 144 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 IGLV2-23P01705 113 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 CNTFRP26992 372 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 PSMB2P49721 201 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 BLCAPP62952 87 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 C10orf55Q5SWW7 151 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 HIST2H2BDQ6DRA6 164 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM167AQ8TBQ9 72 aa5.87□□□□□ -1.47
LIMA1-216ENST00000552909 CLPSL1A2RUU4 121 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 CGB1A6NKQ9 187 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 TMEM262E9PQX1 116 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 ZNF688P0C7X2 276 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 RPL32P62910 135 aaKnown RBP5.86□□□□□ -1.47
LIMA1-216ENST00000552909 HES1Q14469 280 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 VMA21Q3ZAQ7 101 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 LYRM7Q5U5X0 104 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 SMIM20Q8N5G0 67 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 CARD19Q96LW7 228 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 NXT2Q9NPJ8 142 aaKnown RBP5.86□□□□□ -1.47
LIMA1-216ENST00000552909 TNCP24821 2201 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE12JA6NER3 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE7O76087 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE12FP0CL80 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE12GP0CL81 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE12IP0CL82 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 PROK1P58294 105 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 LYZP61626 148 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE4Q13068 117 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 CFHR4Q92496 578 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 RAX2Q96IS3 184 aa5.86□□□□□ -1.47
LIMA1-216ENST00000552909 MRPL35Q9NZE8 188 aaKnown RBP5.86□□□□□ -1.47
LIMA1-216ENST00000552909 NOTCH1P46531 2555 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 LOC107984156A0A0G2JMH3 177 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 OOSP1A8MZH6 123 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 NHLRC4P0CG21 123 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-216ENST00000552909 ARL17AQ8IVW1 177 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 PTH2Q96A98 100 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms