RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NUDT15Q9NV35 164 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 FAT3Q8TDW7 4589 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 K7EQM0 130 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 LYRM1O43325 122 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 ZFP69Q49AA0 526 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 UBE2WQ96B02 151 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 C9orf85Q96MD7 179 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 KLK12Q9UKR0 248 aa11.03□□□□□ -0.64
VPS29-204ENST00000548259 PGPEP1LA6NFU8 196 aa11.02□□□□□ -0.65
VPS29-204ENST00000548259 Q0VG73 95 aa11.02□□□□□ -0.65
VPS29-204ENST00000548259 SCGB1C1Q8TD33 95 aa11.02□□□□□ -0.65
VPS29-204ENST00000548259 TVP23CQ96ET8 276 aa11.02□□□□□ -0.65
VPS29-204ENST00000548259 CHCHD7Q9BUK0 85 aa11.02□□□□□ -0.65
VPS29-204ENST00000548259 S100A4P26447 101 aaKnown RBP11.01□□□□□ -0.65
VPS29-204ENST00000548259 PIK3CD-AS1Q5SR53 167 aa11.01□□□□□ -0.65
VPS29-204ENST00000548259 PQLC2Q6ZP29 291 aa11.01□□□□□ -0.65
VPS29-204ENST00000548259 NIT1Q86X76 327 aa11.01□□□□□ -0.65
VPS29-204ENST00000548259 OR5AC2Q9NZP5 309 aa11.01□□□□□ -0.65
VPS29-204ENST00000548259 A0A1W2PPV4 95 aa11□□□□□ -0.65
VPS29-204ENST00000548259 H2AFB2P0C5Z0 115 aa11□□□□□ -0.65
VPS29-204ENST00000548259 LINC00694P0DN24 101 aa11□□□□□ -0.65
VPS29-204ENST00000548259 LGALSLQ3ZCW2 172 aaPredicted RBP11□□□□□ -0.65
VPS29-204ENST00000548259 OR2T35Q8NGX2 323 aa11□□□□□ -0.65
VPS29-204ENST00000548259 SDHCQ99643 169 aaPredicted RBP11□□□□□ -0.65
VPS29-204ENST00000548259 C1orf43Q9BWL3 253 aa11□□□□□ -0.65
VPS29-204ENST00000548259 PARLQ9H300 379 aa11□□□□□ -0.65
VPS29-204ENST00000548259 GCGP01275 180 aa10.99□□□□□ -0.65
VPS29-204ENST00000548259 RHODO00212 210 aa10.98□□□□□ -0.65
VPS29-204ENST00000548259 PLA2G10O15496 165 aa10.98□□□□□ -0.65
VPS29-204ENST00000548259 SMUG1Q53HV7 270 aa10.98□□□□□ -0.65
VPS29-204ENST00000548259 DMRTA1Q5VZB9 504 aa10.98□□□□□ -0.65
VPS29-204ENST00000548259 Q6ZRU5 148 aa10.98□□□□□ -0.65
VPS29-204ENST00000548259 DAZAP1Q96EP5 407 aaKnown RBP10.98□□□□□ -0.65
VPS29-204ENST00000548259 A0A0D9SG52 128 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 CRPP02741 224 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 GNG5P63218 68 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 CYCSP99999 105 aaKnown RBP10.97□□□□□ -0.65
VPS29-204ENST00000548259 LRRC37A5PQ49AS3 106 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 ATRAIDQ6UW56 229 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 HSD17B11Q8NBQ5 300 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 LINC00479Q96M42 142 aa10.97□□□□□ -0.65
VPS29-204ENST00000548259 RNASE3P12724 160 aaKnown RBP10.96□□□□□ -0.65
VPS29-204ENST00000548259 C5orf17Q8NAS9 161 aa10.96□□□□□ -0.65
VPS29-204ENST00000548259 SGK494Q96LW2 274 aa10.96□□□□□ -0.65
VPS29-204ENST00000548259 SAMD10Q9BYL1 202 aa10.96□□□□□ -0.65
VPS29-204ENST00000548259 C11orf21Q9P2W6 132 aa10.96□□□□□ -0.65
VPS29-204ENST00000548259 FAM240BA0A1B0GVZ2 78 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 ASIPP42127 132 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 ZNF80P51504 273 aaPredicted RBP10.95□□□□□ -0.66
VPS29-204ENST00000548259 SAPCD1Q5SSQ6 148 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 DGAT2L7PQ6IED9 249 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 TMEM75Q8N9X5 138 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 OR2G3Q8NGZ4 309 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 ZC2HC1AQ96GY0 325 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 DPH3P1Q9H4G8 78 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 PSG8Q9UQ74 426 aa10.95□□□□□ -0.66
VPS29-204ENST00000548259 TMEM262E9PQX1 116 aa10.94□□□□□ -0.66
VPS29-204ENST00000548259 HNRNPA3P51991 378 aaKnown RBP10.94□□□□□ -0.66
VPS29-204ENST00000548259 C14orf178Q8N769 122 aaPredicted RBP10.94□□□□□ -0.66
VPS29-204ENST00000548259 DNAJC30Q96LL9 226 aa10.94□□□□□ -0.66
VPS29-204ENST00000548259 TCRAP04437 139 aa10.93□□□□□ -0.66
VPS29-204ENST00000548259 PET100P0DJ07 73 aa10.93□□□□□ -0.66
VPS29-204ENST00000548259 FLI1Q01543 452 aaPredicted RBP10.93□□□□□ -0.66
VPS29-204ENST00000548259 PRNTQ86SH4 94 aa10.93□□□□□ -0.66
VPS29-204ENST00000548259 OR10G7Q8NGN6 311 aa10.93□□□□□ -0.66
VPS29-204ENST00000548259 EIF3GO75821 320 aaKnown RBP eCLIP10.92□□□□□ -0.66
VPS29-204ENST00000548259 MT1HL1P0DM35 61 aa10.92□□□□□ -0.66
VPS29-204ENST00000548259 PKIAP61925 76 aa10.92□□□□□ -0.66
VPS29-204ENST00000548259 RPL36AP83881 106 aaKnown RBP10.92□□□□□ -0.66
VPS29-204ENST00000548259 MZT2BQ6NZ67 158 aa10.92□□□□□ -0.66
VPS29-204ENST00000548259 RPL36ALQ969Q0 106 aaKnown RBP10.92□□□□□ -0.66
VPS29-204ENST00000548259 IL36BQ9NZH7 164 aa10.92□□□□□ -0.66
VPS29-204ENST00000548259 USP17L23D6RBM5 183 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 SIX6O95475 246 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 FAM74A4Q5TZK3 123 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 UFSP1Q6NVU6 142 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.91□□□□□ -0.66
VPS29-204ENST00000548259 RBM38Q9H0Z9 239 aaKnown RBP10.91□□□□□ -0.66
VPS29-204ENST00000548259 Q9UF83 564 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 HSPB11Q9Y547 144 aa10.91□□□□□ -0.66
VPS29-204ENST00000548259 TRBV10-1A0A0K0K1A3 114 aa10.9□□□□□ -0.66
VPS29-204ENST00000548259 FABP5P3A8MUU1 101 aa10.9□□□□□ -0.66
VPS29-204ENST00000548259 HLA-DQA1P01909 254 aa10.9□□□□□ -0.66
VPS29-204ENST00000548259 RPL19P84098 196 aaKnown RBP10.9□□□□□ -0.66
VPS29-204ENST00000548259 C9orf163Q8N9P6 203 aa10.9□□□□□ -0.66
VPS29-204ENST00000548259 OR11H4Q8NGC9 324 aa10.9□□□□□ -0.66
VPS29-204ENST00000548259 H0YIZ8 118 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 HMGB3O15347 200 aaKnown RBP10.89□□□□□ -0.67
VPS29-204ENST00000548259 ARL14EPLP0DKL9 152 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 C15orf54Q8N8G6 183 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 DPH3Q96FX2 82 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 SMIM3Q9BZL3 60 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 JPT2Q9H910 190 aa10.89□□□□□ -0.67
VPS29-204ENST00000548259 IGKV3D-20A0A0C4DH25 116 aa10.88□□□□□ -0.67
VPS29-204ENST00000548259 B4DEV8 164 aa10.88□□□□□ -0.67
VPS29-204ENST00000548259 ANGP03950 147 aaKnown RBP10.88□□□□□ -0.67
VPS29-204ENST00000548259 RPL12P30050 165 aaKnown RBP10.88□□□□□ -0.67
VPS29-204ENST00000548259 MIAQ16674 131 aa10.88□□□□□ -0.67
VPS29-204ENST00000548259 CCDC32Q9BV29 185 aa10.88□□□□□ -0.67
VPS29-204ENST00000548259 EPDR1Q9UM22 224 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms