RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PSMG4Q5JS54 123 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 HIST1H4GQ99525 98 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 PLNP26678 52 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 CRIP2P52943 208 aaPredicted RBP11.9□□□□□ -0.5
LDLR-204ENST00000545707 TOMM6Q96B49 74 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 COTL1Q14019 142 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 TMEM95Q3KNT9 176 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 ORMDL2Q53FV1 153 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 C2orf66Q6UXQ4 117 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 OR5A1Q8NGJ0 315 aa11.9□□□□□ -0.5
LDLR-204ENST00000545707 G3V4G9 280 aa11.89□□□□□ -0.51
LDLR-204ENST00000545707 IGHG2P01859 326 aa11.89□□□□□ -0.51
LDLR-204ENST00000545707 NEXN-AS1Q8NBZ9 246 aa11.89□□□□□ -0.51
LDLR-204ENST00000545707 RPL24P83731 157 aaKnown RBP11.89□□□□□ -0.51
LDLR-204ENST00000545707 CSTL1Q9H114 145 aa11.89□□□□□ -0.51
LDLR-204ENST00000545707 MUC4Q99102 2169 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 HLA-DRB4P13762 266 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 EMP1P54849 157 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 BAALCQ8WXS3 180 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 FAM19A4Q96LR4 140 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 HLA-DRB4X5D2U9 266 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 PRSS29PA6NIE9 313 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 IGLL5B9A064 214 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 C12orf74Q32Q52 190 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 ATP6V0BQ99437 205 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 C20orf78Q9BR46 151 aa11.88□□□□□ -0.51
LDLR-204ENST00000545707 TRAV12-1A0A0B4J245 112 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 OR11H12B2RN74 326 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 OR11H1Q8NG94 326 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 OR11H2Q8NH07 326 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 CYSLTR1Q9Y271 337 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 ZANQ9Y493 2812 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 IGHV4-30-2A0A087WSY4 118 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 A0A087WWL8 130 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 A6NDX4 124 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 DUSP14O95147 198 aaKnown RBP11.87□□□□□ -0.51
LDLR-204ENST00000545707 AMTNQ6UX39 209 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 MTURNQ8N3F0 131 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 USMG5Q96IX5 58 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 PIMREGQ9BSJ6 248 aa11.87□□□□□ -0.51
LDLR-204ENST00000545707 AVPP01185 164 aa11.86□□□□□ -0.51
LDLR-204ENST00000545707 IGKV3-20P01619 116 aa11.86□□□□□ -0.51
LDLR-204ENST00000545707 PKD1L2Q7Z442 2459 aa11.86□□□□□ -0.51
LDLR-204ENST00000545707 C10orf99Q6UWK7 81 aa11.86□□□□□ -0.51
LDLR-204ENST00000545707 TRAV12-3A0A0B4J271 114 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 MYMXA0A1B0GTQ4 84 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 TEX48A0A1B0GUV7 120 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 E9PLD3 99 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 C10orf105Q8TEF2 133 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 ZNF479Q96JC4 524 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 TRBV7-3A0A075B6L6 115 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 H3BMG7 143 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 LINC00315P59091 139 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 KLHL30-AS1Q8NEE0 82 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 CCL19Q99731 98 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 PRADC1Q9BSG0 188 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 DAZ1Q9NQZ3 744 aaKnown RBP11.85□□□□□ -0.51
LDLR-204ENST00000545707 CENPEQ02224 2701 aa11.85□□□□□ -0.51
LDLR-204ENST00000545707 LGALS1P09382 135 aaKnown RBP11.84□□□□□ -0.51
LDLR-204ENST00000545707 WFDC2Q14508 124 aa11.84□□□□□ -0.51
LDLR-204ENST00000545707 DOPEY2Q9Y3R5 2298 aa11.84□□□□□ -0.51
LDLR-204ENST00000545707 ATP5J2P56134 94 aa11.84□□□□□ -0.51
LDLR-204ENST00000545707 RPL39P62891 51 aaKnown RBP11.84□□□□□ -0.51
LDLR-204ENST00000545707 CD300EQ496F6 205 aaPredicted RBP11.84□□□□□ -0.51
LDLR-204ENST00000545707 KIF25-AS1Q9Y6Z4 181 aa11.84□□□□□ -0.51
LDLR-204ENST00000545707 USP9XQ93008 2570 aaPredicted RBP11.83□□□□□ -0.51
LDLR-204ENST00000545707 SORL1Q92673 2214 aa11.83□□□□□ -0.51
LDLR-204ENST00000545707 F5H697 171 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 TSHBP01222 138 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 CRYGDP07320 174 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 CD7P09564 240 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 SLC25A16P16260 332 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 FAM159AQ6UWV7 190 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 APRG1Q8IVJ8 170 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 PLEKHB2Q96CS7 222 aa11.83□□□□□ -0.52
LDLR-204ENST00000545707 USP9YO00507 2555 aaPredicted RBP11.83□□□□□ -0.52
LDLR-204ENST00000545707 TRAV12-2A0A075B6T6 113 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 IGLV1-40P01703 118 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 FOXI2Q6ZQN5 318 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 TP53TG1Q9Y2A0 90 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 FAM74A4Q5TZK3 123 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 SUMO4Q6EEV6 95 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 CREBBPQ92793 2442 aa11.82□□□□□ -0.52
LDLR-204ENST00000545707 ZNF815PA8K554 130 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 ZNF688P0C7X2 276 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 SCGB2A2Q13296 93 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 TAL2Q16559 108 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 NRGNQ92686 78 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 POLQO75417 2590 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 KLLNB2CW77 178 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 H3BUA1 57 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 CLEC2AQ6UVW9 174 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 SFTA2Q6UW10 78 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 DCANP1Q8TF63 244 aa11.81□□□□□ -0.52
LDLR-204ENST00000545707 MED14OSP0DP75 135 aa11.8□□□□□ -0.52
LDLR-204ENST00000545707 SH2D6Q7Z4S9 175 aa11.8□□□□□ -0.52
LDLR-204ENST00000545707 C11orf86A6NJI1 115 aa11.8□□□□□ -0.52
LDLR-204ENST00000545707 MSMBP08118 114 aa11.8□□□□□ -0.52
LDLR-204ENST00000545707 SCGB1D4Q6XE38 83 aa11.8□□□□□ -0.52
LDLR-204ENST00000545707 ZFP2Q6ZN57 461 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms