RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 EBI3Q14213 229 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 LAGE3Q14657 143 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 PMVKQ15126 192 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 LINC01620Q4KN68 170 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 OR4C13Q8NGP0 309 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 C17orf77Q96MU5 243 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 CGB1A6NKQ9 187 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 INS-IGF2F8WCM5 200 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 CD3EP07766 207 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 ZNF672Q499Z4 452 aaPredicted RBP7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 C10orf55Q5SWW7 151 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 TEX36Q5VZQ5 186 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 KLHL30-AS1Q8NEE0 82 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 NUP37Q8NFH4 326 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 LINC01600Q96MT4 127 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 PRR25Q96S07 402 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 TMEM14CQ9P0S9 112 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 IGLV3-9A0A075B6K5 115 aa7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 E7EQL1 145 aa7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 UBR5O95071 2799 aaPredicted RBP7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 TNFAIP6P98066 277 aaPredicted RBP7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 A0A0J9YY99 117 aa7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 IGHV3-30P01768 117 aa7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 IGHV3-30-5P0DP03 117 aa7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 EGR2P11161 476 aaPredicted RBP7.29□□□□□ -1.24
CTNNA1-243ENST00000540387 TRBV19A0A075B6N1 114 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 M0R3E3 92 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 ELANEP08246 267 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 LOXP28300 417 aaPredicted RBP7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 C17orf58Q2M2W7 97 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 SIGLEC15Q6ZMC9 328 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 KIR2DL5BQ8NHK3 375 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 TRBV10-2A0A0K0K1G8 114 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 LYZP61626 148 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 ATXN8Q156A1 80 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 IGFBPL1Q8WX77 278 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 DUX5Q96PT3 197 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 CXXC4Q9H2H0 198 aa7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 RPUSD1Q9UJJ7 312 aaKnown RBP7.28□□□□□ -1.24
CTNNA1-243ENST00000540387 LRBAP50851 2863 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 IGKV1D-17A0A075B6S4 117 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 IGHV3-21A0A0B4J1V1 117 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 FAM240AA0A1B0GVK7 77 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 H7C2G1 150 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 SPRY3O43610 288 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 IGHV3-33P01772 117 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 IGHV4-39P01824 125 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 P0DMU3 169 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 FAM231AP0DMU4 169 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 FAM231CP0DMU5 169 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 Q6ZS46 218 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 UTP20O75691 2785 aaKnown RBP7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 PLXNB1O43157 2135 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 CGB3P0DN86 165 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 CGB7P0DN87 165 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 MZT1Q08AG7 82 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 GAGE2AQ6NT46 116 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 DTX2Q86UW9 622 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNRF1Q8ND25 227 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNRF2Q8NHG8 242 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 DUX3Q96PT4 197 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNRD1Q9P1U0 126 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 AKAP6Q13023 2319 aa7.27□□□□□ -1.25
CTNNA1-243ENST00000540387 EIF4EBP3O60516 100 aaPredicted RBP7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 C4orf26Q17RF5 130 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNF575Q86XF7 245 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 NEXN-AS1Q8NBZ9 246 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 LINC00527Q9UJ94 153 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 DCHS2Q6V1P9 2916 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 A0A1W2PPR1 153 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 TMEM190Q8WZ59 177 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 IMUPQ9GZP8 106 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 KLK15Q9H2R5 256 aa7.26□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNF22P17026 224 aaPredicted RBP7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 HCP5Q6MZN7 132 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 C2orf82Q6UX34 121 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 MRAPQ8TCY5 172 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 SCGB3A1Q96QR1 104 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 CNFNQ9BYD5 112 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 ABCA1O95477 2261 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 HRNRQ86YZ3 2850 aaPredicted RBP7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 IGHV1-46P01743 117 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 ZNF80P51504 273 aaPredicted RBP7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 HRCT1Q6UXD1 115 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 SLC25A29Q8N8R3 303 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 NRACQ8N912 160 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 SPANXCQ9NY87 97 aa7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 HELZ2Q9BYK8 2649 aaKnown RBP7.25□□□□□ -1.25
CTNNA1-243ENST00000540387 PLA2G2AP14555 144 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 HERVK_113P61574 105 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 LYPD1Q8N2G4 141 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 TMEM263Q8WUH6 116 aaKnown RBP7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 C17orf100A8MU93 164 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 COX7CP15954 63 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 CCL8P80075 99 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 TMEM167AQ8TBQ9 72 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 CFHR4Q92496 578 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 USP9YO00507 2555 aaPredicted RBP7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 TRAV26-2A0A0B4J265 109 aa7.24□□□□□ -1.25
CTNNA1-243ENST00000540387 OVOL1O14753 267 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms