RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MYMXA0A1B0GTQ4 84 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 NBL1P41271 181 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 TCF15Q12870 199 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 RNASE13Q5GAN3 156 aaKnown RBP9.9□□□□□ -0.82
USP53-209ENST00000514665 PRAC2D3DTV9 90 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 H3BMG7 143 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 IGLV2-23P01705 113 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 HLA-DRB4P13762 266 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 ZNF503Q96F45 646 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 TTTY13Q9BZ97 58 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 HLA-DRB4X5D2U9 266 aa9.9□□□□□ -0.82
USP53-209ENST00000514665 TEX22C9J3V5 150 aa9.9□□□□□ -0.83
USP53-209ENST00000514665 CRPP02741 224 aa9.9□□□□□ -0.83
USP53-209ENST00000514665 CR1LQ2VPA4 569 aa9.9□□□□□ -0.83
USP53-209ENST00000514665 IGHV4-61A0A0C4DH41 118 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 IGHV4-59P01825 116 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 GATA3P23771 443 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 CGB3P0DN86 165 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 CGB7P0DN87 165 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 PRSS29PA6NIE9 313 aa9.89□□□□□ -0.83
USP53-209ENST00000514665 C1orf229Q6ZS94 237 aaPredicted RBP9.89□□□□□ -0.83
USP53-209ENST00000514665 I3L3M4 83 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 DEFB1P60022 68 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 ZNRF2Q8NHG8 242 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 BUB3O43684 328 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 A0A1W2PPM0 123 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 VWC2LB2RUY7 222 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 RHODO00212 210 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 CCL25O15444 150 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 Q8N9W7 124 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 JPT2Q9H910 190 aa9.88□□□□□ -0.83
USP53-209ENST00000514665 S100A7L2Q5SY68 101 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 RPL39LQ96EH5 51 aaKnown RBP9.87□□□□□ -0.83
USP53-209ENST00000514665 K7EP34 96 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 SPINK8P0C7L1 97 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 DEFB112Q30KQ8 113 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 ZFAND6Q6FIF0 208 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 Q8N7P7 452 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 TMEM141Q96I45 108 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 C1QTNF4Q9BXJ3 329 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 KLF12Q9Y4X4 402 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 TSSC4Q9Y5U2 329 aaPredicted RBP9.87□□□□□ -0.83
USP53-209ENST00000514665 DSCAMO60469 2012 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 SLC25A20O43772 301 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 IGHV4-38-2P0DP08 117 aa9.87□□□□□ -0.83
USP53-209ENST00000514665 VCANP13611 3396 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 CMC4P56277 68 aaPredicted RBP9.86□□□□□ -0.83
USP53-209ENST00000514665 DEFB136Q30KP8 78 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 Q96MF0 132 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 IGKV1D-37A0A075B6S9 117 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 LINC01619G3V211 115 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 NPBQ8NG41 125 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 NDUFA12Q9UI09 145 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 J3QQQ9 107 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 K7EMI3 77 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 GAGE7O76087 117 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 GAGE12FP0CL80 117 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 GAGE12GP0CL81 117 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 GAGE12IP0CL82 117 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 DEFB125Q8N687 156 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 C20orf78Q9BR46 151 aa9.86□□□□□ -0.83
USP53-209ENST00000514665 EYSQ5T1H1 3165 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 ZFP36P26651 326 aaKnown RBP9.85□□□□□ -0.83
USP53-209ENST00000514665 MTORP42345 2549 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 LRRK2Q5S007 2527 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 LINC00322Q6ZN03 302 aaPredicted RBP9.85□□□□□ -0.83
USP53-209ENST00000514665 CEND1Q8N111 149 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 TRBV25-1A0A075B6N4 114 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 FGF6P10767 208 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 AJUBAQ96IF1 538 aa9.85□□□□□ -0.83
USP53-209ENST00000514665 PFN2P35080 140 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 LINC01545Q5VT33 79 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 AZU1P20160 251 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 ADORA2A-AS1P86434 159 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 C12orf74Q32Q52 190 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 IGF2-ASQ6U949 168 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 Q8NA96 180 aa9.84□□□□□ -0.83
USP53-209ENST00000514665 IGHV4-30-2A0A087WSY4 118 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 LEPROTO15243 131 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 FANCD2OSQ96PS1 177 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 INS-IGF2F8WCM5 200 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 CRYGCP07315 174 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 NRGNQ92686 78 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 PRO1854Q9UHT4 67 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 IGLV2-8P01709 118 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 HOXD3P31249 432 aaPredicted RBP9.83□□□□□ -0.84
USP53-209ENST00000514665 ZNF493Q6ZR52 646 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 LENEPQ9Y5L5 61 aa9.83□□□□□ -0.84
USP53-209ENST00000514665 TRBV20-1A0A075B6N2 111 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 RBAKDNA6NC62 111 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 ELANEP08246 267 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 WI2-2373I1.2A0A1W2PRP0 233 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 GAGE6Q13070 117 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 MRPL53Q96EL3 112 aaKnown RBP9.81□□□□□ -0.84
USP53-209ENST00000514665 ATP6V0BQ99437 205 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 C19orf71A6NCJ1 209 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 SIVA1O15304 175 aa9.81□□□□□ -0.84
USP53-209ENST00000514665 GDF5OSQ5U4N7 250 aa9.8□□□□□ -0.84
USP53-209ENST00000514665 TNRC6AQ8NDV7 1962 aaKnown RBP9.8□□□□□ -0.84
USP53-209ENST00000514665 F8W1H4 67 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms