RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TRACP01848 142 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 LOXL1Q08397 574 aaPredicted RBP10.25□□□□□ -0.77
TCOF1-213ENST00000514442 NPC2P61916 151 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 PHLDA1Q8WV24 401 aaPredicted RBP10.25□□□□□ -0.77
TCOF1-213ENST00000514442 CACNA1AO00555 2505 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 J3QLI3 93 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 C8orf31Q8N9H6 132 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 VCYO14598 125 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 CFC1BP0CG36 223 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 CFC1P0CG37 223 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 ZNF491Q8N8L2 437 aa10.25□□□□□ -0.77
TCOF1-213ENST00000514442 NDUFA4O00483 81 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 SMIM2Q9BVW6 85 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 MALP21145 153 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 ADARB2-AS1A8MUL3 147 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 CMC4P56277 68 aaPredicted RBP10.24□□□□□ -0.77
TCOF1-213ENST00000514442 BRWD1-AS2P59051 145 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 TMEM141Q96I45 108 aa10.24□□□□□ -0.77
TCOF1-213ENST00000514442 IGHG4P01861 327 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 DEFB130BP0DP73 79 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 DEFB130AP0DP74 79 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 J3KT08 172 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 DEFB121Q5J5C9 76 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 ZNF493Q6ZR52 646 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 C22orf34Q6ZV56 151 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 C11orf68Q9H3H3 251 aaKnown RBP10.23□□□□□ -0.77
TCOF1-213ENST00000514442 TP53TG1Q9Y2A0 90 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 CENPVL3A0A0U1RRI6 287 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 LINC00322Q6ZN03 302 aaPredicted RBP10.23□□□□□ -0.77
TCOF1-213ENST00000514442 CARD19Q96LW7 228 aa10.23□□□□□ -0.77
TCOF1-213ENST00000514442 CFHR3Q02985 330 aa10.22□□□□□ -0.77
TCOF1-213ENST00000514442 EGR2P11161 476 aaPredicted RBP10.22□□□□□ -0.77
TCOF1-213ENST00000514442 ZFP36P26651 326 aaKnown RBP10.22□□□□□ -0.77
TCOF1-213ENST00000514442 RPL36AP83881 106 aaKnown RBP10.22□□□□□ -0.77
TCOF1-213ENST00000514442 RPL36ALQ969Q0 106 aaKnown RBP10.22□□□□□ -0.77
TCOF1-213ENST00000514442 DEFB136Q30KP8 78 aa10.22□□□□□ -0.77
TCOF1-213ENST00000514442 C3orf56Q8N813 242 aa10.22□□□□□ -0.77
TCOF1-213ENST00000514442 IGHV3-16A0A0C4DH30 117 aa10.21□□□□□ -0.77
TCOF1-213ENST00000514442 EIF4EBP1Q13541 118 aaPredicted RBP10.21□□□□□ -0.77
TCOF1-213ENST00000514442 CEP192Q8TEP8 1941 aa10.21□□□□□ -0.77
TCOF1-213ENST00000514442 F6UB75 175 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 GATA1P15976 413 aaPredicted RBP10.21□□□□□ -0.78
TCOF1-213ENST00000514442 BLCAPP62952 87 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 NCKAP5O14513 1909 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 IGHV7-81A0A0B4J1V7 117 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 DEFB113Q30KQ7 82 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 UTF1Q5T230 341 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 UTRNP46939 3433 aa10.21□□□□□ -0.78
TCOF1-213ENST00000514442 TRBV6-1A0A0K0K1D8 114 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 MLST8Q9BVC4 326 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 TIMM21Q9BVV7 248 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 CENPFP49454 3210 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 TRAV12-1A0A0B4J245 112 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 IGHV7-4-1A0A0J9YVY3 117 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 J3QQQ9 107 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 EML6Q6ZMW3 1958 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 Q8N7P7 452 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 C1orf159Q96HA4 380 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 VPREB3Q9UKI3 123 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 C10orf105Q8TEF2 133 aa10.2□□□□□ -0.78
TCOF1-213ENST00000514442 NCOR2Q9Y618 2525 aa10.19□□□□□ -0.78
TCOF1-213ENST00000514442 URB1-AS1Q96HZ7 61 aa10.19□□□□□ -0.78
TCOF1-213ENST00000514442 CRPP02741 224 aa10.19□□□□□ -0.78
TCOF1-213ENST00000514442 ACYP1P07311 99 aa10.19□□□□□ -0.78
TCOF1-213ENST00000514442 TCL1BO95988 128 aa10.19□□□□□ -0.78
TCOF1-213ENST00000514442 HIST1H4AP62805 103 aaKnown RBP10.19□□□□□ -0.78
TCOF1-213ENST00000514442 INAFM2P0DMQ5 153 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 LINC01620Q4KN68 170 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 PIFOQ8TCI5 191 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 IGF2RP11717 2491 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 E7EUB6 86 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 XGP55808 180 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 PIEZO2Q9H5I5 2752 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 FAM236AA0A1B0GUQ0 79 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 FAM236BA0A1B0GV22 79 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 K7EIM0 57 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 INSL3P51460 131 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 DYNAPQ8N1N2 210 aa10.18□□□□□ -0.78
TCOF1-213ENST00000514442 IGKV2D-26A0A0A0MRZ7 120 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 I3L2K1 104 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 C5orf47Q569G3 176 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 NPBQ8NG41 125 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 SPXQ9BT56 116 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 CSPG4Q6UVK1 2322 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 ELANEP08246 267 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 TRAV13-1A0A0B4J241 112 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 IGHV1OR15-1A0A075B7D0 117 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 IGLV2-23P01705 113 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 RPL32P62910 135 aaKnown RBP10.17□□□□□ -0.78
TCOF1-213ENST00000514442 MSRB1Q9NZV6 116 aa10.17□□□□□ -0.78
TCOF1-213ENST00000514442 C19orf84I3L1E1 186 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 SPRY2O43597 315 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 MED12LQ86YW9 2145 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 HOXD3P31249 432 aaPredicted RBP10.16□□□□□ -0.78
TCOF1-213ENST00000514442 NDUFA11Q86Y39 141 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 IGLV1-47P01700 117 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 C10orf142B7Z368 130 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 IGKV1-17P01599 117 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 Q8N9W7 124 aa10.16□□□□□ -0.78
TCOF1-213ENST00000514442 RBMY1BA6NDE4 496 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms