RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 IGHV3-74A0A0B4J1X5 117 aa12.97□□□□□ -0.33
SQSTM1-211ENST00000506690 DUSP14O95147 198 aaKnown RBP12.97□□□□□ -0.33
SQSTM1-211ENST00000506690 POLEQ07864 2286 aa12.97□□□□□ -0.33
SQSTM1-211ENST00000506690 EBI3Q14213 229 aa12.97□□□□□ -0.33
SQSTM1-211ENST00000506690 LENEPQ9Y5L5 61 aa12.97□□□□□ -0.33
SQSTM1-211ENST00000506690 FAM90A27PA6NNH2 459 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 RHODO00212 210 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 SLC25A20O43772 301 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 TGFAP01135 160 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 TSPEAR-AS2P59090 65 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 KLK9Q2XQG4 91 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 KLK9Q9UKQ9 250 aa12.96□□□□□ -0.33
SQSTM1-211ENST00000506690 IGHV1-69DA0A0B4J2H0 117 aa12.96□□□□□ -0.34
SQSTM1-211ENST00000506690 SPRY2O43597 315 aa12.96□□□□□ -0.34
SQSTM1-211ENST00000506690 SCGB1C2P0DMR2 95 aa12.96□□□□□ -0.34
SQSTM1-211ENST00000506690 ASIPP42127 132 aa12.96□□□□□ -0.34
SQSTM1-211ENST00000506690 GPHB5Q86YW7 130 aa12.96□□□□□ -0.34
SQSTM1-211ENST00000506690 IGIPA6NJ69 53 aa12.95□□□□□ -0.34
SQSTM1-211ENST00000506690 PRTN3P24158 256 aa12.95□□□□□ -0.34
SQSTM1-211ENST00000506690 FAM110DQ8TAY7 271 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-211ENST00000506690 AMELXQ99217 191 aa12.95□□□□□ -0.34
SQSTM1-211ENST00000506690 M0R1W7 72 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 PPP1R17O96001 155 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 IGF1P05019 195 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 APC2O95996 2303 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 PMVKQ15126 192 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 CCDC140Q96MF4 163 aa12.94□□□□□ -0.34
SQSTM1-211ENST00000506690 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 B5MCH6 92 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 MGPP08493 103 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 EMP1P54849 157 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 PHLDA3Q9Y5J5 127 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 U3KQE9 123 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 CRIP2P52943 208 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 ZFAND2AQ8N6M9 145 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 POM121L12Q8N7R1 296 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 TIMD4Q96H15 378 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 METTL26Q96S19 204 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 ACACAQ13085 2346 aa12.93□□□□□ -0.34
SQSTM1-211ENST00000506690 C9JAW5 83 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 CLEC19AQ6UXS0 136 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 Q8N9W7 124 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 TP53TG1Q9Y2A0 90 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 MAP1BP46821 2468 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 MED14OSP0DP75 135 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 S100A4P26447 101 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 RPL32P62910 135 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 VMO1Q7Z5L0 202 aa12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 ITLN2Q8WWU7 325 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-211ENST00000506690 TRAV21A0A0B4J279 112 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 EIF4EBP3O60516 100 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 NDUFV3P56181 108 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 GAGE2BQ13066 116 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 GAGE2EQ4V326 116 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 GAGE2DQ9UEU5 116 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 BSNQ9UPA5 3926 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 OOSP1A8MZH6 123 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 IGHV3-33P01772 117 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 CD3EP07766 207 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 TRPT1Q86TN4 253 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 C16orf92Q96LL3 132 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 C20orf173Q96LM9 149 aa12.91□□□□□ -0.34
SQSTM1-211ENST00000506690 ECSCRQ19T08 205 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 Q8NA96 180 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 ZNRF2Q8NHG8 242 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 TMEM141Q96I45 108 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 LINC00477Q96M19 166 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 PIEZO2Q9H5I5 2752 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 ATMQ13315 3056 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 ANKRD11Q6UB99 2663 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 TRAV4A0A0B4J268 109 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 J3KRW8 73 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 K7ENP7 123 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 SNCGO76070 127 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 P0DMU3 169 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 FAM231AP0DMU4 169 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 FAM231CP0DMU5 169 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 TMEM263Q8WUH6 116 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 RAX2Q96IS3 184 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 LINC01600Q96MT4 127 aa12.9□□□□□ -0.34
SQSTM1-211ENST00000506690 DCHS2Q6V1P9 2916 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 IGHV4OR15-8A0A075B7B6 117 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 A0A087WW49 117 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 A4D1N5 150 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 J3QQQ9 107 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 ANXA2RQ3ZCQ2 193 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 C9orf139Q6ZV77 190 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 TIMM17AQ99595 171 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 CRLF1O75462 422 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 ZNF876PQ49A33 203 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 TMEM170BQ5T4T1 132 aa12.89□□□□□ -0.35
SQSTM1-211ENST00000506690 POLR2KP53803 58 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 LINC00315P59091 139 aa12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 Q6Q795 121 aa12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 KIF25-AS1Q9Y6Z4 181 aa12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 A0A0B4J2C4 111 aa12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 ATP6V0E1O15342 81 aa12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 RNASE3P12724 160 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-211ENST00000506690 Q8N1Y9 231 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms