RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZNF506Q5JVG8 444 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 C9orf85Q96MD7 179 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 PSG8Q9UQ74 426 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 GNG5P63218 68 aa14.01□□□□□ -0.17
SQSTM1-210ENST00000506042 ELOBQ15370 118 aa14.01□□□□□ -0.17
SQSTM1-210ENST00000506042 CYB561D1Q8N8Q1 229 aa14.01□□□□□ -0.17
SQSTM1-210ENST00000506042 SYT8Q8NBV8 401 aa14.01□□□□□ -0.17
SQSTM1-210ENST00000506042 RHODO00212 210 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 RAB2AP61019 212 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 LGALSLQ3ZCW2 172 aaPredicted RBP14□□□□□ -0.17
SQSTM1-210ENST00000506042 LINC00528Q8N1L1 170 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 Q8N976 141 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 TMEM75Q8N9X5 138 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 TVP23CQ96ET8 276 aa14□□□□□ -0.17
SQSTM1-210ENST00000506042 CXorf1O96002 111 aa13.99□□□□□ -0.17
SQSTM1-210ENST00000506042 ASIPP42127 132 aa13.99□□□□□ -0.17
SQSTM1-210ENST00000506042 PRNTQ86SH4 94 aa13.99□□□□□ -0.17
SQSTM1-210ENST00000506042 MARVELD1Q9BSK0 173 aa13.99□□□□□ -0.17
SQSTM1-210ENST00000506042 RBFOX3A6NFN3 312 aa13.98□□□□□ -0.17
SQSTM1-210ENST00000506042 HMGB3O15347 200 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-210ENST00000506042 SERF2P84101 59 aa13.98□□□□□ -0.17
SQSTM1-210ENST00000506042 SGK494Q96LW2 274 aa13.98□□□□□ -0.17
SQSTM1-210ENST00000506042 GAGE12JA6NER3 117 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 PGPEP1LA6NFU8 196 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 STAG3L2P0CL84 134 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 STAG3L3P0CL85 134 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 GCHFRP30047 84 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 SUMO1P63165 101 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 GAGE1Q13065 139 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 GAGE4Q13068 117 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 GAGE5Q13069 117 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 GAGE13Q4V321 117 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 OR2G3Q8NGZ4 309 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 PSMG3Q9BT73 122 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 PARLQ9H300 379 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 EPDR1Q9UM22 224 aa13.97□□□□□ -0.17
SQSTM1-210ENST00000506042 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 FABP5P3A8MUU1 101 aa13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 C14orf177Q52M58 125 aa13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 Q6ZSA8 131 aa13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 ACTR3CQ9C0K3 210 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-210ENST00000506042 A0A087WX48 190 aa13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 KRTAP29-1A8MX34 341 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 SERTAD4-AS1Q5TG53 156 aa13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 DPPA3Q6W0C5 159 aa13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 RAB24Q969Q5 203 aa13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 CHCHD7Q9BUK0 85 aa13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 NKX6-2Q9C056 277 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-210ENST00000506042 EIF3GO75821 320 aaKnown RBP eCLIP13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 IFNA7P01567 189 aa13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 ZNF80P51504 273 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 HSD17B11Q8NBQ5 300 aa13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 IL36BQ9NZH7 164 aa13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 FAM30AQ9NZY2 134 aa13.94□□□□□ -0.18
SQSTM1-210ENST00000506042 SRRM2Q9UQ35 2752 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 IGKV2D-24A0A075B6R9 120 aa13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 LECT2O14960 151 aa13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 RNASE3P12724 160 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 DAZ4Q86SG3 579 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 OR2T35Q8NGX2 323 aa13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 DAZ3Q9NR90 486 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-210ENST00000506042 FLG2Q5D862 2391 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 A0A1W2PRE2 83 aa13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 Q0VG73 95 aa13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 OR11H4Q8NGC9 324 aa13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 SUN5Q8TC36 379 aa13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 C11orf21Q9P2W6 132 aa13.92□□□□□ -0.18
SQSTM1-210ENST00000506042 B4DEV8 164 aa13.91□□□□□ -0.18
SQSTM1-210ENST00000506042 WFDC1Q9HC57 220 aa13.91□□□□□ -0.18
SQSTM1-210ENST00000506042 TNFSF18Q9UNG2 199 aa13.91□□□□□ -0.18
SQSTM1-210ENST00000506042 PKIAP61925 76 aa13.9□□□□□ -0.18
SQSTM1-210ENST00000506042 BAALCQ8WXS3 180 aa13.9□□□□□ -0.18
SQSTM1-210ENST00000506042 PHLDA3Q9Y5J5 127 aa13.9□□□□□ -0.18
SQSTM1-210ENST00000506042 RPL36AP83881 106 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 FAM74A4Q5TZK3 123 aa13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 DMRTA1Q5VZB9 504 aa13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 RPL36ALQ969Q0 106 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 ARL2-SNX15V9GYD0 113 aa13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 HERC1Q15751 4861 aa13.89□□□□□ -0.19
SQSTM1-210ENST00000506042 BORCS7-ASMTA0A0B4J1R7 106 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 IGLV2-11P01706 119 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 CRPP02741 224 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 LINC00694P0DN24 101 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 TPT1P13693 172 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 HIST1H2BAQ96A08 127 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 LINC00479Q96M42 142 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 CHAC1Q9BUX1 264 aa13.88□□□□□ -0.19
SQSTM1-210ENST00000506042 TRBV10-1A0A0K0K1A3 114 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 ATP6V0CP27449 155 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 SCXQ7RTU7 201 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 NIT1Q86X76 327 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 INO80EQ8NBZ0 244 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 UBE2WQ96B02 151 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 C1orf43Q9BWL3 253 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 KLK12Q9UKR0 248 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 ZFP30Q9Y2G7 519 aa13.87□□□□□ -0.19
SQSTM1-210ENST00000506042 H3BVH4 76 aa13.86□□□□□ -0.19
SQSTM1-210ENST00000506042 OXTP01178 125 aa13.86□□□□□ -0.19
SQSTM1-210ENST00000506042 UBE2G1P62253 170 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms