RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SMIM12Q96EX1 92 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 VSIG2Q96IQ7 327 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 IL36BQ9NZH7 164 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 PRO0255Q9UI72 69 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 HYDINQ4G0P3 5121 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 RAB19A4D1S5 217 aa11.34□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 MGST1P10620 155 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 CRYBA4P53673 196 aa11.34□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 TEX261Q6UWH6 196 aa11.34□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 HHLA3Q9XRX5 114 aa11.34□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 RS1O15537 224 aa11.33□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 IGLV2-8P01709 118 aa11.33□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 ARMS2P0C7Q2 107 aa11.33□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 ZNF575Q86XF7 245 aa11.33□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 MUC4Q99102 2169 aa11.33□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 TRBV20OR9-2A0A075B6H5 130 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 TMEM250H0YL14 139 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 CXCL1P09341 107 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 CCL18P55774 89 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 RPL19P84098 196 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 TOR2AQ5JU69 321 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 PIK3CD-AS1Q5SR53 167 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 CFAP126Q5VTH2 177 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 ICOSQ9Y6W8 199 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 VPS13DQ5THJ4 4388 aa11.32□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 A0A096LPF7 62 aa11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 CIDEAO60543 219 aa11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 FAM3BP58499 235 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 SYT8Q8NBV8 401 aa11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 FAM210AQ96ND0 272 aa11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 EIF5A2Q9GZV4 153 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 MED14OSP0DP75 135 aa11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 DAZAP1Q96EP5 407 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 PARLQ9H300 379 aa11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 SCRT2Q9NQ03 307 aa11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 BIN3Q9NQY0 253 aa11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 PHLDA3Q9Y5J5 127 aa11.3□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 C19orf71A6NCJ1 209 aa11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 A8MWV9 139 aa11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 NDUFS6O75380 124 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 GATA1P15976 413 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 DMRTA1Q5VZB9 504 aa11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 PCNPQ8WW12 178 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 LINC00588Q9Y4M8 146 aa11.29□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 M0R381 172 aa11.28□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 MRPL23Q16540 153 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 ZFP82Q8N141 532 aa11.28□□□□□ -0.6
MSH5-SAPCD1-206ENST00000491552 KMT2AQ03164 3969 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 IGHV3-73A0A0B4J1V6 119 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 K7EQD1 137 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 GYPEP15421 78 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 CEBPGP53567 150 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 ESRGQ1W209 222 aa11.27□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NACAE9PAV3 2078 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 IGLV2-18A0A075B6J9 118 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SNAI2O43623 268 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 P01737 135 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SRIP30626 198 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 RPS20P60866 119 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 ZFP2Q6ZN57 461 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 OR2D3Q8NGH3 330 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 ZNRF2Q8NHG8 242 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 JPT2Q9H910 190 aa11.26□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 LOC100131303A0A0U1RQF7 123 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 TRBV6-4A0A1B0GX49 114 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 K7EN84 100 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 RHODO00212 210 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NXPH4O95158 308 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SRP19P09132 144 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 OR5AL1P0C617 328 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 RHOHQ15669 191 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NEGR1Q7Z3B1 354 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SLC25A29Q8N8R3 303 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 OCC1Q8TAD7 63 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 PRADC1Q9BSG0 188 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SAMD10Q9BYL1 202 aa11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 MRPS16Q9Y3D3 137 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 DNAH6Q9C0G6 4158 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 XKRY2A2RUG3 117 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 M0R2N4 97 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 UFSP1Q6NVU6 142 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 OR10AG1Q8NH19 301 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SFRP2Q96HF1 295 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SMIM7Q9BQ49 75 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 UPK3BQ9BT76 320 aa11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SSBP4Q9BWG4 385 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 GZMBP10144 247 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SPANXN1Q5VSR9 72 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 FER1L6-AS1Q8NA97 138 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NUDT10Q8NFP7 164 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NUDT11Q96G61 164 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 LY96Q9Y6Y9 160 aa11.23□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 A0A087WWL8 130 aa11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 IGLC6P0CF74 106 aa11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 FAM74A4Q5TZK3 123 aa11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 SH2D6Q7Z4S9 175 aa11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 TPPP3Q9BW30 176 aa11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 RNASE7Q9H1E1 156 aaKnown RBP11.22□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 MUC21A0A0G2JKD1 596 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 MUC21A0A140T8X8 626 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms