RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SCIMPQ6UWF3 145 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 C10orf99Q6UWK7 81 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 NDUFA11Q86Y39 141 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 PPP1R1CQ8WVI7 109 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 TSC22D3Q99576 134 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 ERG28Q9UKR5 140 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 TEX49A0A1B0GTD5 131 aa0.75□□□□□ -2.29
RFC4-213ENST00000489028 CXorf51AA0A1B0GTR3 108 aa0.75□□□□□ -2.29
RFC4-213ENST00000489028 ZNF670-ZNF695F2Z2N8 137 aa0.75□□□□□ -2.29
RFC4-213ENST00000489028 RRAS2P62070 204 aaPredicted RBP0.75□□□□□ -2.29
RFC4-213ENST00000489028 VSTM2AQ8TAG5 236 aa0.75□□□□□ -2.29
RFC4-213ENST00000489028 PSMG3Q9BT73 122 aaPredicted RBP0.75□□□□□ -2.29
RFC4-213ENST00000489028 FAM107BQ9H098 131 aa0.75□□□□□ -2.29
RFC4-213ENST00000489028 HELZP42694 1942 aaKnown RBP0.75□□□□□ -2.29
RFC4-213ENST00000489028 SPTBP11277 2137 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 NBDYA0A0U1RRE5 68 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 K7EIL1 84 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 FXYD1O00168 92 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 PRB4P10163 310 aaPredicted RBP0.74□□□□□ -2.29
RFC4-213ENST00000489028 SLC25A6P12236 298 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 GUCA1AP43080 201 aaPredicted RBP0.74□□□□□ -2.29
RFC4-213ENST00000489028 SPINK13Q1W4C9 94 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 SPINK9Q5DT21 86 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 C5orf56Q8N8D9 126 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 LINC00208Q96KT6 92 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 TMEM191AQ9H0A3 160 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 CTTNBP2Q8WZ74 1663 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 CITO14578 2027 aa0.74□□□□□ -2.29
RFC4-213ENST00000489028 ERCC6Q03468 1493 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 ZCCHC6Q5VYS8 1495 aaKnown RBP0.73□□□□□ -2.29
RFC4-213ENST00000489028 CDK12Q9NYV4 1490 aaPredicted RBP0.73□□□□□ -2.29
RFC4-213ENST00000489028 CPDO75976 1380 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 M0R129 80 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 PYYP10082 97 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 KLKP1Q107X0 134 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 SPCS2Q15005 226 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 SPANXN1Q5VSR9 72 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 LINC01545Q5VT33 79 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 MIC13Q5XKP0 118 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 Q6ZUT4 128 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 PLAC4Q8WY50 150 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 COA4Q9NYJ1 87 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 CCDC167Q9P0B6 97 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 LRP5O75197 1615 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 CDK5RAP2Q96SN8 1893 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 LAMA4Q16363 1823 aa0.73□□□□□ -2.29
RFC4-213ENST00000489028 TRAV12-2A0A075B6T6 113 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 NDUFA2O43678 99 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 SPINT3P49223 89 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 SELENOWP63302 87 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 ZNF56Q15929 161 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 KCNRGQ8N5I3 272 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 ARL11Q969Q4 196 aa0.72□□□□□ -2.29
RFC4-213ENST00000489028 BLMP54132 1417 aaPredicted RBP0.72□□□□□ -2.29
RFC4-213ENST00000489028 VIRMAQ69YN4 1812 aaKnown RBP0.71□□□□□ -2.3
RFC4-213ENST00000489028 TCRBV3S1A0A5B6 114 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 PIRTP0C851 137 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 OR2T2Q6IF00 324 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 C1orf54Q8WWF1 131 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 TMEM141Q96I45 108 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 BET1LQ9NYM9 111 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 NDUFA12Q9UI09 145 aa0.71□□□□□ -2.3
RFC4-213ENST00000489028 TMEM2Q9UHN6 1383 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 ZDBF2Q9HCK1 2354 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TENM3Q9P273 2699 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TRPM7Q96QT4 1865 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 A6NIN4 97 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TFF1P04155 84 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 PIPP12273 146 aaPredicted RBP0.7□□□□□ -2.3
RFC4-213ENST00000489028 ZNF137PP52743 207 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 RPL7L1Q6DKI1 246 aaKnown RBP0.7□□□□□ -2.3
RFC4-213ENST00000489028 CYP2G1PQ6ZSU1 146 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TSKUQ8WUA8 353 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 COPS9Q8WXC6 57 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 SPTSSAQ969W0 71 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 IFI27L1Q96BM0 104 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 SDF2Q99470 211 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TMEM14BQ9NUH8 114 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 TMEM242Q9NWH2 141 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 NOTCH1P46531 2555 aa0.7□□□□□ -2.3
RFC4-213ENST00000489028 FAM92AA1XBS5 289 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 EFCAB10A6NFE3 127 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 FAM25AB3EWG3 89 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 FAM25CB3EWG5 89 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 FAM25GB3EWG6 89 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 K7EP13 123 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 PITX3O75364 302 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 IL5P05113 134 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 PRB3Q04118 309 aaPredicted RBP0.69□□□□□ -2.3
RFC4-213ENST00000489028 EMX2Q04743 252 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 SLC48A1Q6P1K1 146 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 DSCR8Q96T75 97 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 LINC00470Q9BZP3 86 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 ATG2AQ2TAZ0 1938 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 KNTC1P50748 2209 aa0.69□□□□□ -2.3
RFC4-213ENST00000489028 GRIN2AQ12879 1464 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 TRAV12-3A0A0B4J271 114 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 RBAKDNA6NC62 111 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 MCRIP1C9JLW8 97 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 ADGRB1O14514 1584 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 175.7 ms