RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 BRI3O95415 125 aa13.51□□□□□ -0.25
VIM-206ENST00000487938 CRYBG3Q68DQ2 2970 aa13.51□□□□□ -0.25
VIM-206ENST00000487938 RNF223E7ERA6 249 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 ORMDL2Q53FV1 153 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 TOMM6Q96B49 74 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 H7C1H1 209 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 NDUFS8O00217 210 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 C20orf78Q9BR46 151 aa13.5□□□□□ -0.25
VIM-206ENST00000487938 NEGR1Q7Z3B1 354 aa13.49□□□□□ -0.25
VIM-206ENST00000487938 NRGNQ92686 78 aa13.49□□□□□ -0.25
VIM-206ENST00000487938 VPS25Q9BRG1 176 aa13.49□□□□□ -0.25
VIM-206ENST00000487938 CHTOPQ9Y3Y2 248 aaKnown RBP13.49□□□□□ -0.25
VIM-206ENST00000487938 SPCS1Q9Y6A9 102 aa13.49□□□□□ -0.25
VIM-206ENST00000487938 PLNP26678 52 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 SAMD5Q5TGI4 173 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 C10orf99Q6UWK7 81 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 CEND1Q8N111 149 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 JPT2Q9H910 190 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 MUC4Q99102 2169 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 F8VRH5 84 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 SAP30O75446 220 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 APRG1Q8IVJ8 170 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 NHP2Q9NX24 153 aaKnown RBP13.48□□□□□ -0.25
VIM-206ENST00000487938 CSMD2Q7Z408 3487 aa13.48□□□□□ -0.25
VIM-206ENST00000487938 C2orf66Q6UXQ4 117 aa13.47□□□□□ -0.25
VIM-206ENST00000487938 CSTL1Q9H114 145 aa13.47□□□□□ -0.25
VIM-206ENST00000487938 TRAV12-1A0A0B4J245 112 aa13.47□□□□□ -0.25
VIM-206ENST00000487938 CFHR3Q02985 330 aa13.47□□□□□ -0.25
VIM-206ENST00000487938 NEXN-AS1Q8NBZ9 246 aa13.47□□□□□ -0.25
VIM-206ENST00000487938 CFAP46Q8IYW2 2715 aa13.46□□□□□ -0.25
VIM-206ENST00000487938 CSPG4Q6UVK1 2322 aa13.46□□□□□ -0.25
VIM-206ENST00000487938 TRAV12-3A0A0B4J271 114 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 MED14OSP0DP75 135 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 FABP2P12104 132 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 HLA-DRB4P13762 266 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 FAM159AQ6UWV7 190 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 TM2D2Q9BX73 214 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 HLA-DRB4X5D2U9 266 aa13.46□□□□□ -0.26
VIM-206ENST00000487938 IGHV4-59P01825 116 aa13.45□□□□□ -0.26
VIM-206ENST00000487938 DCANP1Q8TF63 244 aa13.45□□□□□ -0.26
VIM-206ENST00000487938 BAALCQ8WXS3 180 aa13.45□□□□□ -0.26
VIM-206ENST00000487938 UTP20O75691 2785 aaKnown RBP13.45□□□□□ -0.26
VIM-206ENST00000487938 KLLNB2CW77 178 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 IGKV3-20P01619 116 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 PHLDA1Q8WV24 401 aaPredicted RBP13.44□□□□□ -0.26
VIM-206ENST00000487938 A0A087WWL8 130 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 SLC25A16P16260 332 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 ID1P41134 155 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 LINC00315P59091 139 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 KIF25-AS1Q9Y6Z4 181 aa13.44□□□□□ -0.26
VIM-206ENST00000487938 PRSS29PA6NIE9 313 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 B4DSR2 109 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 K7ERU9 68 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 AGRNO00468 2067 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 CD7P09564 240 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 HIST1H4GQ99525 98 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 TRBV7-9A0A0J9YWB2 115 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 K7EMT4 169 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 ZNF688P0C7X2 276 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 DEFB112Q30KQ8 113 aa13.43□□□□□ -0.26
VIM-206ENST00000487938 FLNCQ14315 2725 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 TRAV12-2A0A075B6T6 113 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 OR11H12B2RN74 326 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 F5H697 171 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 DUSP14O95147 198 aaKnown RBP13.42□□□□□ -0.26
VIM-206ENST00000487938 PSMB8P28062 276 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 OR11H1Q8NG94 326 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 OR11H2Q8NH07 326 aa13.42□□□□□ -0.26
VIM-206ENST00000487938 OR5A1Q8NGJ0 315 aa13.41□□□□□ -0.26
VIM-206ENST00000487938 DOPEY1Q5JWR5 2465 aa13.41□□□□□ -0.26
VIM-206ENST00000487938 IGSF10Q6WRI0 2623 aa13.41□□□□□ -0.26
VIM-206ENST00000487938 MYMXA0A1B0GTQ4 84 aa13.41□□□□□ -0.26
VIM-206ENST00000487938 SUMO4Q6EEV6 95 aa13.41□□□□□ -0.26
VIM-206ENST00000487938 NXPH4O95158 308 aa13.4□□□□□ -0.26
VIM-206ENST00000487938 POM121L12Q8N7R1 296 aa13.4□□□□□ -0.26
VIM-206ENST00000487938 MAPK1IP1LQ8NDC0 245 aa13.4□□□□□ -0.26
VIM-206ENST00000487938 PPP1R17O96001 155 aa13.39□□□□□ -0.27
VIM-206ENST00000487938 EMP1P54849 157 aa13.39□□□□□ -0.27
VIM-206ENST00000487938 C12orf74Q32Q52 190 aa13.39□□□□□ -0.27
VIM-206ENST00000487938 CRYGDP07320 174 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 FAM74A4Q5TZK3 123 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 DUX5Q96PT3 197 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 MDFICQ9P1T7 246 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 CYSLTR1Q9Y271 337 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 TP53TG1Q9Y2A0 90 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 IGLL5B9A064 214 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 TSHBP01222 138 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 RPL39P62891 51 aaKnown RBP13.38□□□□□ -0.27
VIM-206ENST00000487938 TAL2Q16559 108 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 PRADC1Q9BSG0 188 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 ACACBO00763 2458 aa13.38□□□□□ -0.27
VIM-206ENST00000487938 TRBV7-3A0A075B6L6 115 aa13.37□□□□□ -0.27
VIM-206ENST00000487938 IGHV4OR15-8A0A075B7B6 117 aa13.37□□□□□ -0.27
VIM-206ENST00000487938 A0A087WW49 117 aa13.37□□□□□ -0.27
VIM-206ENST00000487938 POLR2KP53803 58 aaKnown RBP13.37□□□□□ -0.27
VIM-206ENST00000487938 ZFP2Q6ZN57 461 aa13.37□□□□□ -0.27
VIM-206ENST00000487938 LGALS1P09382 135 aaKnown RBP13.37□□□□□ -0.27
VIM-206ENST00000487938 CD300EQ496F6 205 aaPredicted RBP13.37□□□□□ -0.27
VIM-206ENST00000487938 DOPEY2Q9Y3R5 2298 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 USP9XQ93008 2570 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms