RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 IGKCP01834 107 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 ASIPP42127 132 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 KIR2DS2P43631 304 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 SEC61GP60059 68 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 PDPNQ86YL7 162 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 OR1L4Q8NGR5 311 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 FLYWCH2Q96CP2 140 aaKnown RBP5.9□□□□□ -1.47
USP4-211ENST00000485450 RASL11BQ9BPW5 248 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 FBXL15Q9H469 300 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 A6NDX4 124 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 D6R8Y8 96 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 CRYGDP07320 174 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 C10orf113Q5VZT2 155 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 ESM1Q9NQ30 184 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 CALYQ9NYX4 217 aa5.9□□□□□ -1.47
USP4-211ENST00000485450 SPTBN1Q01082 2364 aaKnown RBP5.89□□□□□ -1.47
USP4-211ENST00000485450 FLNAP21333 2647 aaKnown RBP5.89□□□□□ -1.47
USP4-211ENST00000485450 IGHV3-43A0A0B4J1X8 118 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 PGPA6NDG6 321 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 J3KT08 172 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 HOXA3O43365 443 aaPredicted RBP5.89□□□□□ -1.47
USP4-211ENST00000485450 COX7A2P2O60397 106 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 IGHV3-43DP0DP04 118 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 IGHV4-38-2P0DP08 117 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 RPS28P62857 69 aaKnown RBP5.89□□□□□ -1.47
USP4-211ENST00000485450 C2orf83Q53S99 150 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 MAPKAPK5-AS1Q8N8E1 139 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 ZNRF2Q8NHG8 242 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 HIST1H4GQ99525 98 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 PRADC1Q9BSG0 188 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 INAFM1C9JVW0 142 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 BUB1B-PAK6H3BSN5 160 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 SNCGO76070 127 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 IL4P05112 153 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 FXYD7P58549 80 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 PATE2Q6UY27 113 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 GTSCR1Q86UQ5 136 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 PPP1R27Q86WC6 154 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 S1PR3Q99500 378 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 RNF5Q99942 180 aa5.89□□□□□ -1.47
USP4-211ENST00000485450 LINC01546A6NGU7 62 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 UBE2D3P61077 147 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 UBE2D2P62837 147 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 HERVK_113P63121 156 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 ORMDL3Q8N138 153 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 NPBQ8NG41 125 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 IFI27L2Q9H2X8 130 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 NBASA2RRP1 2371 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 M0R2P5 195 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 NDUFA3O95167 84 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 TFF1P04155 84 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 TCRAP04437 139 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 CD69Q07108 199 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 MRGPRG-AS1Q2M3A8 158 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 HRCT1Q6UXD1 115 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 TRPT1Q86TN4 253 aaKnown RBP5.88□□□□□ -1.47
USP4-211ENST00000485450 CCDC140Q96MF4 163 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 MED13LQ71F56 2210 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 DNHD1Q96M86 4753 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 PSMB2P49721 201 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 PRCDQ00LT1 54 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 CFHR3Q02985 330 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 ZFP2Q6ZN57 461 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 Q86TA4 180 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 POM121L12Q8N7R1 296 aa5.88□□□□□ -1.47
USP4-211ENST00000485450 DPM2O94777 84 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 MLANAQ16655 118 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 FAM104BQ5XKR9 115 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 ANKRD29Q8N6D5 301 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 MYOZ3Q8TDC0 251 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 DUX3Q96PT4 197 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 MALRD1Q5VYJ5 2156 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 A8MWV9 139 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 DUSP14O95147 198 aaKnown RBP5.87□□□□□ -1.47
USP4-211ENST00000485450 KHDC1LQ5JSQ8 128 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 DYNAPQ8N1N2 210 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 TRBV6-1A0A0K0K1D8 114 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 MYMXA0A1B0GTQ4 84 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 ZNF785A8K8V0 405 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 SPINT2O43291 252 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 ORM2P19652 201 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 ZNF134P52741 427 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 TIRAPP58753 221 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 TWIST1Q15672 202 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 RPL39P5Q59GN2 51 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 LYRM7Q5U5X0 104 aa5.87□□□□□ -1.47
USP4-211ENST00000485450 SRSF12Q8WXF0 261 aaKnown RBP5.87□□□□□ -1.47
USP4-211ENST00000485450 ATP5LO75964 103 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 RNASE2P10153 161 aaKnown RBP5.86□□□□□ -1.47
USP4-211ENST00000485450 PVRIGQ6DKI7 326 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 WFDC3Q8IUB2 231 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 MAPK1IP1LQ8NDC0 245 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 A8MZ25 164 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 IGLV2-11P01706 119 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 LINC00305Q7Z4B0 112 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 OR10J6PQ8NGY7 276 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 FBN1P35555 2871 aaKnown RBP5.86□□□□□ -1.47
USP4-211ENST00000485450 RS1O15537 224 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 ORM1P02763 201 aa5.86□□□□□ -1.47
USP4-211ENST00000485450 CCL3L1P16619 93 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms