RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 C16orf74Q96GX8 76 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 C11orf21Q9P2W6 132 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 TP53TG3Q9ULZ0 132 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 IGKV3D-20A0A0C4DH25 116 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 PLAC8L1A1L4L8 177 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 B4DEV8 164 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 DEFB130BP0DP73 79 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 DEFB130AP0DP74 79 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 CT83Q5H943 113 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 DNLZQ5SXM8 178 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 UBE2DNLQ8IWF7 75 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 TIMM8BQ9Y5J9 83 aaPredicted RBP11.74□□□□□ -0.53
TRIM54-203ENST00000485306 BIRC6Q9NR09 4857 aa11.74□□□□□ -0.53
TRIM54-203ENST00000485306 M0R036 132 aa11.73□□□□□ -0.53
TRIM54-203ENST00000485306 GATCO43716 136 aaKnown RBP11.73□□□□□ -0.53
TRIM54-203ENST00000485306 OR2D3Q8NGH3 330 aa11.73□□□□□ -0.53
TRIM54-203ENST00000485306 SFRP2Q96HF1 295 aa11.73□□□□□ -0.53
TRIM54-203ENST00000485306 RNASE7Q9H1E1 156 aaKnown RBP11.73□□□□□ -0.53
TRIM54-203ENST00000485306 RPP21Q9H633 154 aaKnown RBP11.73□□□□□ -0.53
TRIM54-203ENST00000485306 PPP1R2P9O14990 202 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 TYMSP04818 313 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 ASIPP42127 132 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 ZNF415Q09FC8 603 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 TMEM88Q6PEY1 159 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 C15orf53Q8NAA6 179 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 OR10G8Q8NGN5 311 aa11.72□□□□□ -0.53
TRIM54-203ENST00000485306 RNASE8Q8TDE3 154 aaKnown RBP11.72□□□□□ -0.53
TRIM54-203ENST00000485306 IGHV3-16A0A0C4DH30 117 aa11.71□□□□□ -0.53
TRIM54-203ENST00000485306 MT-ND4LP03901 98 aa11.71□□□□□ -0.53
TRIM54-203ENST00000485306 ATP5G1P05496 136 aa11.71□□□□□ -0.53
TRIM54-203ENST00000485306 MED14OSP0DP75 135 aa11.71□□□□□ -0.53
TRIM54-203ENST00000485306 RNF212Q495C1 297 aa11.71□□□□□ -0.53
TRIM54-203ENST00000485306 A8MWL6 223 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 SNURFLB1AK76 121 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 F5H768 121 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 GNRH2O43555 120 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 S100A4P26447 101 aaKnown RBP11.7□□□□□ -0.54
TRIM54-203ENST00000485306 TCL1AP56279 114 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 SVBPQ8N300 66 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 ANAPC16Q96DE5 110 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 SPXQ9BT56 116 aa11.7□□□□□ -0.54
TRIM54-203ENST00000485306 NOP10Q9NPE3 64 aaKnown RBP11.7□□□□□ -0.54
TRIM54-203ENST00000485306 TMSB15BA0A087X1C1 80 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 A0A1W2PPQ1 181 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 FAM231BA6NCW3 169 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 APOC3P02656 99 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 RPL19P84098 196 aaKnown RBP11.69□□□□□ -0.54
TRIM54-203ENST00000485306 DAZ2Q13117 558 aaKnown RBP11.69□□□□□ -0.54
TRIM54-203ENST00000485306 C11orf72Q8NBR9 251 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 CTDSP1Q9GZU7 261 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 GFRA4Q9GZZ7 299 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 IL36BQ9NZH7 164 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 V9GYV3 84 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 FRAS1Q86XX4 4008 aa11.69□□□□□ -0.54
TRIM54-203ENST00000485306 SNAPINO95295 136 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 RHEBQ15382 184 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 LINC00336Q6ZUF6 198 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 ZNF575Q86XF7 245 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 CLRN3Q8NCR9 226 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 TSKUQ8WUA8 353 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 MDFICQ9P1T7 246 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 VPS13DQ5THJ4 4388 aa11.68□□□□□ -0.54
TRIM54-203ENST00000485306 GRIFINA4D1Z8 144 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 OR5AL1P0C617 328 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 FOXA3P55318 350 aaPredicted RBP11.67□□□□□ -0.54
TRIM54-203ENST00000485306 LGALS9BQ3B8N2 356 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 PTH2Q96A98 100 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 C9orf85Q96MD7 179 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 SSBP4Q9BWG4 385 aaPredicted RBP11.67□□□□□ -0.54
TRIM54-203ENST00000485306 SCRT2Q9NQ03 307 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 GSN-AS1Q9NRJ2 163 aa11.67□□□□□ -0.54
TRIM54-203ENST00000485306 F2Z2F3 143 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 M0R2N4 97 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 SNAI2O43623 268 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 ARMS2P0C7Q2 107 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 IGLC6P0CF74 106 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 RNASE3P12724 160 aaKnown RBP11.66□□□□□ -0.54
TRIM54-203ENST00000485306 FAM3BP58499 235 aaPredicted RBP11.66□□□□□ -0.54
TRIM54-203ENST00000485306 PIK3CD-AS1Q5SR53 167 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 FER1L6-AS1Q8NA97 138 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 TMEM242Q9NWH2 141 aa11.66□□□□□ -0.54
TRIM54-203ENST00000485306 A0A087WWC5 75 aa11.65□□□□□ -0.54
TRIM54-203ENST00000485306 M0R2P5 195 aa11.65□□□□□ -0.54
TRIM54-203ENST00000485306 NUDT3O95989 172 aa11.65□□□□□ -0.54
TRIM54-203ENST00000485306 C7orf77A4D0Y5 90 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 H3BVH4 76 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 SPINK4O60575 86 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 WDR73Q6P4I2 378 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 LINC00612Q8N6U2 182 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 SYT8Q8NBV8 401 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 PHLDA3Q9Y5J5 127 aa11.64□□□□□ -0.55
TRIM54-203ENST00000485306 IGLV2-18A0A075B6J9 118 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 SMIM27A0A1W2PRY6 76 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 GZMBP10144 247 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 CACNG7P62955 275 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 RASL10AQ92737 203 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 IMMP2LQ96T52 175 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 NAT8BQ9UHF3 227 aa11.63□□□□□ -0.55
TRIM54-203ENST00000485306 DNAH6Q9C0G6 4158 aa11.62□□□□□ -0.55
TRIM54-203ENST00000485306 GAGE12BA1L429 117 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms