RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 F5P12259 2224 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 TRAV2A0A0B4J234 112 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 A0A1W2PRE2 83 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 E5RI56 91 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 M0QZK8 103 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 COX4I1P13073 169 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 HIST1H1BP16401 226 aaKnown RBP-0.4□□□□□ -2.47
VPS50-217ENST00000485140 RPL22P35268 128 aaKnown RBP-0.4□□□□□ -2.47
VPS50-217ENST00000485140 CRYBA4P53673 196 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 ELOF1P60002 83 aaKnown RBP-0.4□□□□□ -2.47
VPS50-217ENST00000485140 HRCT1Q6UXD1 115 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 TAS2R8Q9NYW2 309 aa-0.4□□□□□ -2.47
VPS50-217ENST00000485140 KIDINS220Q9ULH0 1771 aa-0.41□□□□□ -2.47
VPS50-217ENST00000485140 GVQW2A0A096LPI5 108 aaPredicted RBP-0.41□□□□□ -2.48
VPS50-217ENST00000485140 TCRBV3S1A0A5B6 114 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 TMEM238C9JI98 176 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 POLR2HP52434 150 aaKnown RBP-0.41□□□□□ -2.48
VPS50-217ENST00000485140 PSPHP78330 225 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 PLGLB1Q02325 96 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 TMEM242Q9NWH2 141 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 METTL1Q9UBP6 276 aaKnown RBP-0.41□□□□□ -2.48
VPS50-217ENST00000485140 TRAPPC2LQ9UL33 140 aa-0.41□□□□□ -2.48
VPS50-217ENST00000485140 LRP5O75197 1615 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 AKR1D1P51857 326 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 NDUFA11Q86Y39 141 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 OR9Q1Q8NGQ5 310 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 PCBD2Q9H0N5 130 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 FER1L6Q2WGJ9 1857 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 PCLOQ9Y6V0 5065 aa-0.42□□□□□ -2.48
VPS50-217ENST00000485140 HELZP42694 1942 aaKnown RBP-0.42□□□□□ -2.48
VPS50-217ENST00000485140 HSPG2P98160 4391 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 ZNF292O60281 2723 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 FAM208BQ5VWN6 2430 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 VIRMAQ69YN4 1812 aaKnown RBP-0.43□□□□□ -2.48
VPS50-217ENST00000485140 CXorf51AA0A1B0GTR3 108 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 CYP2G1PQ6ZSU1 146 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 SLC25A26Q70HW3 274 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 KMT2AQ03164 3969 aa-0.43□□□□□ -2.48
VPS50-217ENST00000485140 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.43□□□□□ -2.48
VPS50-217ENST00000485140 STAB1Q9NY15 2570 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 DOPEY2Q9Y3R5 2298 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 SLC25A5P05141 298 aaKnown RBP-0.44□□□□□ -2.48
VPS50-217ENST00000485140 SSBP1Q04837 148 aaKnown RBP-0.44□□□□□ -2.48
VPS50-217ENST00000485140 OR8B8Q15620 311 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 HSD17B12Q53GQ0 312 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 FAM74A4Q5TZK3 123 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 CCDC115Q96NT0 180 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 SLC35B3Q9H1N7 401 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 NDUFAF1Q9Y375 327 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 CCDC171Q6TFL3 1326 aa-0.44□□□□□ -2.48
VPS50-217ENST00000485140 KMT2CQ8NEZ4 4911 aaKnown RBP-0.44□□□□□ -2.48
VPS50-217ENST00000485140 MED23Q9ULK4 1368 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 ZANQ9Y493 2812 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 WDR97A6NE52 1622 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 TCRAP04437 139 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 SLC48A1Q6P1K1 146 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 CDC26Q8NHZ8 85 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 ERG28Q9UKR5 140 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 LRP2P98164 4655 aa-0.45□□□□□ -2.48
VPS50-217ENST00000485140 AKAP6Q13023 2319 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 MUC2Q02817 5179 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 PKD1L1Q8TDX9 2849 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 SPTBN2O15020 2390 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 TRBV7-1A0A0A6YYK4 115 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 A0A1B0GW64 132 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 RPL7P18124 248 aaKnown RBP-0.46□□□□□ -2.48
VPS50-217ENST00000485140 TOMM20LQ6UXN7 152 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 C4orf33Q8N1A6 199 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 TMEM35BQ8NCS4 154 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 CALML5Q9NZT1 146 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 SCP2D1Q9UJQ7 156 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 MYCBP2O75592 4640 aa-0.46□□□□□ -2.48
VPS50-217ENST00000485140 CSMD3Q7Z407 3707 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 BORCS7-ASMTA0A0B4J1R7 106 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 RBP4P02753 201 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 TFF1P04155 84 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 ACYP2P14621 99 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 G0S2P27469 103 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 GCHFRP30047 84 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 SAMD13Q5VXD3 122 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 OR2T2Q6IF00 324 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 DYNLRB2Q8TF09 96 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 V9GYV3 84 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 PTPRQQ9UMZ3 2332 aa-0.47□□□□□ -2.48
VPS50-217ENST00000485140 LPAP08519 4548 aa-0.47□□□□□ -2.49
VPS50-217ENST00000485140 DOCK11Q5JSL3 2073 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 DCHS2Q6V1P9 2916 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 ZNF142P52746 1687 aaPredicted RBP-0.48□□□□□ -2.49
VPS50-217ENST00000485140 A0A1B0GV72 72 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 YPEL1O60688 119 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 SMIM24O75264 130 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 DPM2O94777 84 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 CCL3L1P16619 93 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 GNG10P50151 68 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 TMEM128Q5BJH2 165 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 Q6ZRX8 168 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 SNX29P2Q8IUI4 249 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 UBE2DNLQ8IWF7 75 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 CYP4F30PQ9H0H9 118 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms