RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 NEGR1Q7Z3B1 354 aa10.8□□□□□ -0.68
CCDC28B-205ENST00000483009 AKAP14Q86UN6 197 aa10.8□□□□□ -0.68
CCDC28B-205ENST00000483009 SLC51BQ86UW2 128 aa10.8□□□□□ -0.68
CCDC28B-205ENST00000483009 C6orf223Q8N319 242 aa10.8□□□□□ -0.68
CCDC28B-205ENST00000483009 TRAV1-1A0A0B4J248 108 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 SCO2A0A1W2PP80 73 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 PGPEP1LA6NFU8 196 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 B4DEV8 164 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 CIDEAO60543 219 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 S100A9P06702 114 aaKnown RBP10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 GATA1P15976 413 aaPredicted RBP10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 SULT1A2P50226 295 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 CFAP126Q5VTH2 177 aa10.79□□□□□ -0.68
CCDC28B-205ENST00000483009 A0A1W2PPQ1 181 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 M0R036 132 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 NXPH4O95158 308 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 ZNF674Q2M3X9 581 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 LYPD5Q6UWN5 251 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 TXNDC17Q9BRA2 123 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 KRTAP1-5Q9BYS1 174 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 MANBALQ9NQG1 85 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 IL36BQ9NZH7 164 aa10.78□□□□□ -0.68
CCDC28B-205ENST00000483009 KRBOX1C9JBD0 128 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 TEX46H3BTG2 121 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 CCL20P78556 96 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 LINC01559Q495D7 138 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 PIK3CD-AS1Q5SR53 167 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 DNLZQ5SXM8 178 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 GNG13Q9P2W3 67 aa10.77□□□□□ -0.69
CCDC28B-205ENST00000483009 LOC100131303A0A0U1RQF7 123 aa10.76□□□□□ -0.69
CCDC28B-205ENST00000483009 H3BVH4 76 aa10.76□□□□□ -0.69
CCDC28B-205ENST00000483009 SIVA1O15304 175 aa10.76□□□□□ -0.69
CCDC28B-205ENST00000483009 BAGE2Q86Y30 109 aa10.76□□□□□ -0.69
CCDC28B-205ENST00000483009 NHLRC2Q8NBF2 726 aa10.76□□□□□ -0.69
CCDC28B-205ENST00000483009 IGHV3-73A0A0B4J1V6 119 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 GRIFINA4D1Z8 144 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 A8MWV9 139 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 RHOHQ15669 191 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 SH2D6Q7Z4S9 175 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 C9orf62Q8N4C0 152 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 SLC25A29Q8N8R3 303 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 C11orf52Q96A22 123 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 PRADC1Q9BSG0 188 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 DNAH11Q96DT5 4516 aa10.75□□□□□ -0.69
CCDC28B-205ENST00000483009 TMSB15BA0A087X1C1 80 aa10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 TRBV6-4A0A1B0GX49 114 aa10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 ARMS2P0C7Q2 107 aa10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 BTF3P20290 206 aaKnown RBP10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 MLST8Q9BVC4 326 aa10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 PARLQ9H300 379 aa10.74□□□□□ -0.69
CCDC28B-205ENST00000483009 MGST1P10620 155 aaKnown RBP10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 TIRAPP58753 221 aa10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 TNP2Q05952 138 aa10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 ZFP2Q6ZN57 461 aa10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 SYT8Q8NBV8 401 aa10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 SCRT2Q9NQ03 307 aa10.73□□□□□ -0.69
CCDC28B-205ENST00000483009 IFNA1P01562 189 aa10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 RPL35P42766 123 aaKnown RBP10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 DMRTA1Q5VZB9 504 aa10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 ZNF575Q86XF7 245 aa10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 PHLDA3Q9Y5J5 127 aa10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 DYNC1H1Q14204 4646 aaKnown RBP10.72□□□□□ -0.69
CCDC28B-205ENST00000483009 CXCL1P09341 107 aa10.71□□□□□ -0.69
CCDC28B-205ENST00000483009 DERL1Q9BUN8 251 aa10.71□□□□□ -0.69
CCDC28B-205ENST00000483009 JPT2Q9H910 190 aa10.71□□□□□ -0.69
CCDC28B-205ENST00000483009 RHODO00212 210 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 MED14OSP0DP75 135 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 BCL2P10415 239 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 LINC00315P59091 139 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 RPL19P84098 196 aaKnown RBP10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 MEF2BQ02080 365 aaPredicted RBP10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 PRR27Q6MZM9 219 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 UFSP1Q6NVU6 142 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 WFDC10BQ8IUB3 73 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 ZFP82Q8N141 532 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 SAMD10Q9BYL1 202 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 LY96Q9Y6Y9 160 aa10.7□□□□□ -0.7
CCDC28B-205ENST00000483009 M0R381 172 aa10.69□□□□□ -0.7
CCDC28B-205ENST00000483009 PDE6DO43924 150 aa10.69□□□□□ -0.7
CCDC28B-205ENST00000483009 CENPWQ5EE01 88 aa10.69□□□□□ -0.7
CCDC28B-205ENST00000483009 Q6ZSN1 163 aa10.69□□□□□ -0.7
CCDC28B-205ENST00000483009 PKHD1P08F94 4074 aa10.69□□□□□ -0.7
CCDC28B-205ENST00000483009 TRAV9-2A0A087WT02 112 aa10.68□□□□□ -0.7
CCDC28B-205ENST00000483009 DNAH10OSP0CZ25 163 aa10.68□□□□□ -0.7
CCDC28B-205ENST00000483009 TAGLN2P37802 199 aaKnown RBP10.68□□□□□ -0.7
CCDC28B-205ENST00000483009 SFRP2Q96HF1 295 aa10.68□□□□□ -0.7
CCDC28B-205ENST00000483009 VAX2Q9UIW0 290 aa10.68□□□□□ -0.7
CCDC28B-205ENST00000483009 A0A1B0GVG6 124 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 K7EP13 123 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 EVI2AP22794 236 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 FAM74A4Q5TZK3 123 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 ALKAL2Q6UX46 152 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 ATP6V0E2Q8NHE4 81 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 MED9Q9NWA0 146 aa10.67□□□□□ -0.7
CCDC28B-205ENST00000483009 HERC2O95714 4834 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 A0A087WWL8 130 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 RAB19A4D1S5 217 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GAGE12JA6NER3 117 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 SNAI2O43623 268 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 IGLV2-8P01709 118 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms