RNA–Protein interactions for RNA: ENST00000471372.1

SMC5-202, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-202ENST00000471372 FAM25CB3EWG5 89 aa2.13□□□□□ -2.07
SMC5-202ENST00000471372 FAM25GB3EWG6 89 aa2.13□□□□□ -2.07
SMC5-202ENST00000471372 SLC25A6P12236 298 aa2.13□□□□□ -2.07
SMC5-202ENST00000471372 LINC01545Q5VT33 79 aa2.13□□□□□ -2.07
SMC5-202ENST00000471372 VSTM2AQ8TAG5 236 aa2.13□□□□□ -2.07
SMC5-202ENST00000471372 MRPL35Q9NZE8 188 aaKnown RBP2.13□□□□□ -2.07
SMC5-202ENST00000471372 COL6A6A6NMZ7 2263 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 LOC101927531A0A1B0GV80 90 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 GUCA1AP43080 201 aaPredicted RBP2.12□□□□□ -2.07
SMC5-202ENST00000471372 SCIMPQ6UWF3 145 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 KCNRGQ8N5I3 272 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 C1orf54Q8WWF1 131 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 DPH3Q96FX2 82 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 SNRNP200O75643 2136 aaKnown RBP2.12□□□□□ -2.07
SMC5-202ENST00000471372 ZGRF1Q86YA3 2104 aa2.12□□□□□ -2.07
SMC5-202ENST00000471372 MYOM3Q5VTT5 1437 aa2.11□□□□□ -2.07
SMC5-202ENST00000471372 TRBV10-1A0A0K0K1A3 114 aa2.11□□□□□ -2.07
SMC5-202ENST00000471372 HIGD1CA8MV81 97 aa2.11□□□□□ -2.07
SMC5-202ENST00000471372 CCDC167Q9P0B6 97 aa2.11□□□□□ -2.07
SMC5-202ENST00000471372 CCKP06307 115 aa2.1□□□□□ -2.07
SMC5-202ENST00000471372 Q6ZQY7 126 aa2.1□□□□□ -2.07
SMC5-202ENST00000471372 KIF13AQ9H1H9 1805 aa2.1□□□□□ -2.07
SMC5-202ENST00000471372 TMEM2Q9UHN6 1383 aa2.1□□□□□ -2.07
SMC5-202ENST00000471372 NBDYA0A0U1RRE5 68 aa2.09□□□□□ -2.07
SMC5-202ENST00000471372 PIRTP0C851 137 aa2.09□□□□□ -2.07
SMC5-202ENST00000471372 SPCS2Q15005 226 aa2.09□□□□□ -2.07
SMC5-202ENST00000471372 Q86TA4 180 aa2.09□□□□□ -2.07
SMC5-202ENST00000471372 NDUFA12Q9UI09 145 aa2.09□□□□□ -2.07
SMC5-202ENST00000471372 PHLPP1O60346 1717 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 ARL14EPLP0DKL9 152 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 FXYD3Q14802 87 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 KRTAP21-2Q3LI59 83 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 XAF1Q6GPH4 301 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 DEFB132Q7Z7B7 95 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 CCL19Q99731 98 aa2.08□□□□□ -2.08
SMC5-202ENST00000471372 ROCK2O75116 1388 aaKnown RBP2.08□□□□□ -2.08
SMC5-202ENST00000471372 PTPRMP28827 1452 aa2.07□□□□□ -2.08
SMC5-202ENST00000471372 TRAV12-2A0A075B6T6 113 aa2.07□□□□□ -2.08
SMC5-202ENST00000471372 LINC00575Q6W349 94 aa2.07□□□□□ -2.08
SMC5-202ENST00000471372 LINC00208Q96KT6 92 aa2.07□□□□□ -2.08
SMC5-202ENST00000471372 CDK12Q9NYV4 1490 aaPredicted RBP2.07□□□□□ -2.08
SMC5-202ENST00000471372 DLEU1O43261 78 aa2.06□□□□□ -2.08
SMC5-202ENST00000471372 PDCD10Q9BUL8 212 aa2.06□□□□□ -2.08
SMC5-202ENST00000471372 TMEM242Q9NWH2 141 aa2.06□□□□□ -2.08
SMC5-202ENST00000471372 PLXNA2O75051 1894 aa2.05□□□□□ -2.08
SMC5-202ENST00000471372 CCDC179H3BU77 68 aa2.05□□□□□ -2.08
SMC5-202ENST00000471372 IL5P05113 134 aa2.05□□□□□ -2.08
SMC5-202ENST00000471372 HIST1H1DP16402 221 aaKnown RBP2.05□□□□□ -2.08
SMC5-202ENST00000471372 CITO14578 2027 aa2.05□□□□□ -2.08
SMC5-202ENST00000471372 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.04□□□□□ -2.08
SMC5-202ENST00000471372 TRBV30A0A0K0K1B3 111 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 LOC100130705A0A1B0GUX0 176 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 SPANXN1Q5VSR9 72 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 OR2T2Q6IF00 324 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 C5orf56Q8N8D9 126 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 IFI27L1Q96BM0 104 aa2.04□□□□□ -2.08
SMC5-202ENST00000471372 HELZ2Q9BYK8 2649 aaKnown RBP2.04□□□□□ -2.08
SMC5-202ENST00000471372 FOCADQ5VW36 1801 aa2.03□□□□□ -2.08
SMC5-202ENST00000471372 NCOA3Q9Y6Q9 1424 aa2.03□□□□□ -2.08
SMC5-202ENST00000471372 LINC00587B1AMM8 73 aa2.03□□□□□ -2.08
SMC5-202ENST00000471372 MEIG1Q5JSS6 88 aa2.03□□□□□ -2.08
SMC5-202ENST00000471372 SEC11CQ9BY50 192 aa2.03□□□□□ -2.08
SMC5-202ENST00000471372 FAM92AA1XBS5 289 aa2.02□□□□□ -2.09
SMC5-202ENST00000471372 CAV3P56539 151 aa2.02□□□□□ -2.09
SMC5-202ENST00000471372 Q8N6K4 173 aa2.02□□□□□ -2.09
SMC5-202ENST00000471372 TSKUQ8WUA8 353 aa2.02□□□□□ -2.09
SMC5-202ENST00000471372 ASCC3Q8N3C0 2202 aaKnown RBP2.02□□□□□ -2.09
SMC5-202ENST00000471372 MBD5Q9P267 1494 aa2.01□□□□□ -2.09
SMC5-202ENST00000471372 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.01□□□□□ -2.09
SMC5-202ENST00000471372 SPTSSAQ969W0 71 aa2.01□□□□□ -2.09
SMC5-202ENST00000471372 ROS1P08922 2347 aa2.01□□□□□ -2.09
SMC5-202ENST00000471372 APODP05090 189 aa2□□□□□ -2.09
SMC5-202ENST00000471372 SLC48A1Q6P1K1 146 aa2□□□□□ -2.09
SMC5-202ENST00000471372 TMEM141Q96I45 108 aa2□□□□□ -2.09
SMC5-202ENST00000471372 APOC1P02654 83 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 NPC2P61916 151 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 ZNF56Q15929 161 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 NDUFA11Q86Y39 141 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 SNRNP25Q9BV90 132 aaKnown RBP1.99□□□□□ -2.09
SMC5-202ENST00000471372 AGPAT4-IT1Q9H0P7 198 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 AKAP11Q9UKA4 1901 aa1.99□□□□□ -2.09
SMC5-202ENST00000471372 FXYD1O00168 92 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 SNCGO76070 127 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 PIPP12273 146 aaPredicted RBP1.98□□□□□ -2.09
SMC5-202ENST00000471372 UBE2G1P62253 170 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 Q6ZS92 163 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 C2orf88Q9BSF0 95 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 RREB1Q92766 1687 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 DLEC1Q9Y238 1755 aa1.98□□□□□ -2.09
SMC5-202ENST00000471372 NDUFB6O95139 128 aa1.97□□□□□ -2.09
SMC5-202ENST00000471372 C9orf116Q5BN46 136 aaPredicted RBP1.97□□□□□ -2.09
SMC5-202ENST00000471372 S100A7L2Q5SY68 101 aa1.97□□□□□ -2.09
SMC5-202ENST00000471372 ATG2AQ2TAZ0 1938 aa1.97□□□□□ -2.09
SMC5-202ENST00000471372 MED12Q93074 2177 aa1.96□□□□□ -2.1
SMC5-202ENST00000471372 TRAV12-3A0A0B4J271 114 aa1.96□□□□□ -2.1
SMC5-202ENST00000471372 SPAARA0A1B0GVQ0 90 aa1.96□□□□□ -2.1
SMC5-202ENST00000471372 TCRBV3S1A0A5B6 114 aa1.96□□□□□ -2.1
SMC5-202ENST00000471372 LSM10Q969L4 123 aaKnown RBP1.96□□□□□ -2.1
SMC5-202ENST00000471372 RERGLQ9H628 205 aa1.96□□□□□ -2.1
SMC5-202ENST00000471372 PEG3Q9GZU2 1588 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms