RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 Q6ZTI0 123 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 EIF5A2Q9GZV4 153 aaKnown RBP8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 NACAE9PAV3 2078 aa8.36□□□□□ -1.07
SQSTM1-206ENST00000466342 GAGE12BA1L429 117 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 EPM2AB3EWF7 344 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 GAGE7O76087 117 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 IGLV2-8P01709 118 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 GAGE12FP0CL80 117 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 GAGE12GP0CL81 117 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 GAGE12IP0CL82 117 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 GNG4P50150 75 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 TNP2Q05952 138 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 SMIM12Q96EX1 92 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 SPXQ9BT56 116 aa8.35□□□□□ -1.07
SQSTM1-206ENST00000466342 TRBV20OR9-2A0A075B6H5 130 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 TRGV1A0A0A0MS02 117 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 RAB19A4D1S5 217 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 B4DEV8 164 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 ORM1P02763 201 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 ATP5G1P05496 136 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 HTN3P15516 51 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 LINC01559Q495D7 138 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 C18orf15Q96N68 181 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 PARLQ9H300 379 aa8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 MRPL16Q9NX20 251 aaKnown RBP8.34□□□□□ -1.07
SQSTM1-206ENST00000466342 KRBOX1C9JBD0 128 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 C9JCJ5 164 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 M0R036 132 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 M0R2P5 195 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 RNF212Q495C1 297 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 PRR27Q6MZM9 219 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 C9orf85Q96MD7 179 aa8.33□□□□□ -1.08
SQSTM1-206ENST00000466342 SRRM2Q9UQ35 2752 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 TRGV2A0A075B6R0 118 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 PGPEP1LA6NFU8 196 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 SRP19P09132 144 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 MGST1P10620 155 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 RNASE3P12724 160 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 ASIPP42127 132 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 RAB14P61106 215 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 IFITM2Q01629 132 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 DNLZQ5SXM8 178 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 UBE2DNLQ8IWF7 75 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 C15orf53Q8NAA6 179 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 RASL10AQ92737 203 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 BIN3Q9NQY0 253 aa8.32□□□□□ -1.08
SQSTM1-206ENST00000466342 F5H768 121 aa8.31□□□□□ -1.08
SQSTM1-206ENST00000466342 S100A4P26447 101 aaKnown RBP8.31□□□□□ -1.08
SQSTM1-206ENST00000466342 CEBPGP53567 150 aa8.31□□□□□ -1.08
SQSTM1-206ENST00000466342 TMEM88Q6PEY1 159 aa8.31□□□□□ -1.08
SQSTM1-206ENST00000466342 IL36BQ9NZH7 164 aa8.31□□□□□ -1.08
SQSTM1-206ENST00000466342 MYCBP2O75592 4640 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 TMSB15BA0A087X1C1 80 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 C19orf71A6NCJ1 209 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 H3BVH4 76 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 CXCL1P09341 107 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 OR5I1Q13606 314 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 PEA15Q15121 130 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 CLLU1Q5K131 121 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 DAZAP1Q96EP5 407 aaKnown RBP8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 SMDT1Q9H4I9 107 aa8.3□□□□□ -1.08
SQSTM1-206ENST00000466342 GRIFINA4D1Z8 144 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 C9JQL5 133 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 HOXA5P20719 270 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 RPL19P84098 196 aaKnown RBP8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 SRSF3P84103 164 aaKnown RBP8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 OCC1Q8TAD7 63 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 PTH2Q96A98 100 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 SMIM7Q9BQ49 75 aa8.29□□□□□ -1.08
SQSTM1-206ENST00000466342 TRAV4A0A0B4J268 109 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 ZNF727A8MUV8 499 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 K7EN84 100 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 ARMS2P0C7Q2 107 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 FAM3BP58499 235 aaPredicted RBP8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 ZNF876PQ49A33 203 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 PIK3CD-AS1Q5SR53 167 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 LY96Q9Y6Y9 160 aa8.28□□□□□ -1.08
SQSTM1-206ENST00000466342 P01737 135 aa8.27□□□□□ -1.09
SQSTM1-206ENST00000466342 IGHV3-53P01767 116 aa8.27□□□□□ -1.09
SQSTM1-206ENST00000466342 OR4C5Q8NGB2 326 aa8.27□□□□□ -1.09
SQSTM1-206ENST00000466342 OR2D3Q8NGH3 330 aa8.27□□□□□ -1.09
SQSTM1-206ENST00000466342 VPS13BQ7Z7G8 4022 aa8.27□□□□□ -1.09
SQSTM1-206ENST00000466342 TRAV26-1A0A087WT03 109 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 H3BNG1 76 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 SFTA3P0C7M3 94 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 RPS20P60866 119 aaKnown RBP8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 FAM74A3Q4VXF1 159 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 SPATA12Q7Z6I5 190 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 LINC01551Q86U37 167 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 SYT8Q8NBV8 401 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 NUDT10Q8NFP7 164 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 NUDT11Q96G61 164 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 ZNF479Q96JC4 524 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 PHLDA3Q9Y5J5 127 aa8.26□□□□□ -1.09
SQSTM1-206ENST00000466342 TRGV4A0A0C4DH28 118 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 A0A0J9YY99 117 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 XKRY2A2RUG3 117 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 RS1O15537 224 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 SNAI2O43623 268 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 OR5AL1P0C617 328 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms